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Biological
molecules
Carbon based life forms are made
form molecules using carbon atoms
A carbon atom has
6 protons
6 neutrons and
6 electrons
This gives 4 electrons in the outer
shell so a carbon atom will make 4
covalent bonds to have a stable 8
electrons
Here carbon (blue) has made a covalent bond
with each of 4 hydrogens (red)
This makes a molecule called methane with a
chemical formula of CH4
Methane is a 3-dimensional structure like this:
Which can be drawn like this: Or more simply like this:
Carbon can share an electron with another carbon, forming a
covalent bond
Notice that there are now only 3 hydrogen atoms on each carbon
CH3CH3 or C2H6
This is ethene
By forming covalent bonds between carbon atoms long
carbon chains can be built
Notice that each carbon makes 4 bonds so the terminal
carbons have 3 hydrogens, the central ones have 2
Other atoms like oxygen and nitrogen can also form
covalent bonds with carbon
Oxygen requires 2 more electrons to form a stable shell so
often forms a double bond, sharing 2 electrons with carbon
which also shares 2 electrons
Double Bonds
These can form between 2 carbons or between other atoms
Each carbon still has 4 bonds, but there are 2 bonds between the
carbons
So there is only space for 2 hydrogen atoms to attach to each
carbon
This is Ethylene
There can even be a triple bond
between carbon molecules
Notice that sometimes we
simply draw a line without
showing Hydrogen on the end –
it is implied
Double Bonds can form between
carbon and other molecules
Or as part of a ring structure
Functional groups
The order in which atoms attach to a carbon chain will determine the properties
of the molecule
Aldehyde group - CHO
This attaches to a
carbon chain
This is a carbonyl group
Aldehydes often smell aromatic
Acetone and some vitamins are aldehydes
Keto group - CO
A central carbon bonds to oxygen
This is another carbonyl group
Hydroxyl group - OH
This attaches to a carbon
Molecules with this group are called alcohols
Hydroxyl groups are important in making bonds by condensation
Molecules are named according to the position of
the hydroxyl group
Hydroxyl is
terminal
Hydroxyl is in
the middle
Carboxyl group - COOH
These are called acids
The hydrogen will dissociate and become a proton
(H+
) in solution – making the solution acidic
The oxygen left becomes positively charged giving
the molecule an overall charge
Charged molecules are called polar molecules
Saturated Carbon chains have no double
bonds
Unsaturated carbon chains have one or more double
bonds and therefore fewer hydrogen molecules
OPTICAL ISOMERISM
This may occur when 2 molecules have the same
molecular formula but different arrangements in
space, forming mirror images.
If a central carbon has FOUR DIFFERENT groups
attaches it will be asymmetrical, and may exist in
two different forms.
The central black carbon has 4 different
groups attached
By rearranging these we can form isomers
which are mirror images
Like a left and a right hand
This is important in biology because molecules must fit into enzymes
If the shape is wrong it would be like trying to put your left hand into a
right-hand glove
1. introduction
Isomers change the angle of plane-polarised light;
Bending it either right or left
They are named accordingly
Molecules are actually based on the
properties of the isomers of glyceraldehyde
D = right
L = left

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1. introduction

  • 2. Carbon based life forms are made form molecules using carbon atoms A carbon atom has 6 protons 6 neutrons and 6 electrons This gives 4 electrons in the outer shell so a carbon atom will make 4 covalent bonds to have a stable 8 electrons Here carbon (blue) has made a covalent bond with each of 4 hydrogens (red) This makes a molecule called methane with a chemical formula of CH4
  • 3. Methane is a 3-dimensional structure like this:
  • 4. Which can be drawn like this: Or more simply like this:
  • 5. Carbon can share an electron with another carbon, forming a covalent bond Notice that there are now only 3 hydrogen atoms on each carbon CH3CH3 or C2H6 This is ethene
  • 6. By forming covalent bonds between carbon atoms long carbon chains can be built Notice that each carbon makes 4 bonds so the terminal carbons have 3 hydrogens, the central ones have 2
  • 7. Other atoms like oxygen and nitrogen can also form covalent bonds with carbon Oxygen requires 2 more electrons to form a stable shell so often forms a double bond, sharing 2 electrons with carbon which also shares 2 electrons
  • 8. Double Bonds These can form between 2 carbons or between other atoms Each carbon still has 4 bonds, but there are 2 bonds between the carbons So there is only space for 2 hydrogen atoms to attach to each carbon This is Ethylene
  • 9. There can even be a triple bond between carbon molecules Notice that sometimes we simply draw a line without showing Hydrogen on the end – it is implied
  • 10. Double Bonds can form between carbon and other molecules Or as part of a ring structure
  • 11. Functional groups The order in which atoms attach to a carbon chain will determine the properties of the molecule
  • 12. Aldehyde group - CHO This attaches to a carbon chain This is a carbonyl group Aldehydes often smell aromatic Acetone and some vitamins are aldehydes
  • 13. Keto group - CO A central carbon bonds to oxygen This is another carbonyl group
  • 14. Hydroxyl group - OH This attaches to a carbon Molecules with this group are called alcohols Hydroxyl groups are important in making bonds by condensation
  • 15. Molecules are named according to the position of the hydroxyl group Hydroxyl is terminal Hydroxyl is in the middle
  • 16. Carboxyl group - COOH These are called acids The hydrogen will dissociate and become a proton (H+ ) in solution – making the solution acidic The oxygen left becomes positively charged giving the molecule an overall charge Charged molecules are called polar molecules
  • 17. Saturated Carbon chains have no double bonds Unsaturated carbon chains have one or more double bonds and therefore fewer hydrogen molecules
  • 18. OPTICAL ISOMERISM This may occur when 2 molecules have the same molecular formula but different arrangements in space, forming mirror images. If a central carbon has FOUR DIFFERENT groups attaches it will be asymmetrical, and may exist in two different forms.
  • 19. The central black carbon has 4 different groups attached By rearranging these we can form isomers which are mirror images
  • 20. Like a left and a right hand This is important in biology because molecules must fit into enzymes If the shape is wrong it would be like trying to put your left hand into a right-hand glove
  • 22. Isomers change the angle of plane-polarised light; Bending it either right or left They are named accordingly
  • 23. Molecules are actually based on the properties of the isomers of glyceraldehyde D = right L = left