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BCHS 3304: General Biochemistry I, Section 07553
Spring 2003 1:00-2:30 PM Mon./Wed. AH 101
http://www.uh.edu/sibs/faculty/glegge
Instructor:
Glen B. Legge, Ph.D., Cambridge UK
Phone: 713-743-8380
Fax: 713-743-2636
E-mail: glegge@uh.edu
Office hours:
Mon. and Wed. (2:30-4:00 PM) or by appointment
353 SR2 (Science and Research Building 2)
1
SIBS program
• Monday Chat room on Webct: 8:00-10:00 PM
Tuesday Workshop: 5:00-7:00 PM in 101 AH
Wednesday Office Hours: 3:00-4:45 PM in 114
S Wednesday Workshop: 5:00-7:00 PM in 116
SR1
• Students must activate their webct accounts.
• SIBS will not print out exam reviews
• Jerry Johnson (BCHS 3304 workshops)
contact email: MYSTIK1775@aol.com
Acids and Bases
January 27 2003
Ionization of water
• Although neutral water has a tendency to
ionize
H2O <-> H+
+ OH-
• The free proton is associated with a
water molecule to form the hydronium ion
H3O+
• High ionic mobility due to proton jumping
Proton Jumping
Large proton and hydroxide mobility
• H3O+ : 362.4 x 10-5
cm2
•V-1
•s-1
• Na+
: 51.9 x 10-5
cm2
•V-1
•s-1
• Hydronium ion migration; hops by switching
partners at 1012
per second
Equilibrium expression
• Described by:
K = [H+
][OH-
]
[H2O]
• Where K is the dissociation constant
• Considering [H2O] constant yields
Kw = [H+
][OH-
]
Kw
Kw = [H+
][OH-
]
• Where Kw is the ionization constant of
water
• For pure water ionization constant is
10-14
M2
at 25º
• For pure water
[H+
] = [OH-
] = (Kw)1/2
= 10-7
M
Acids and bases
• For pure water (neutral)
[H+
] = [OH-
] = (Kw)1/2
= 10-7
M
• Acidic if [H+
] > 10-7
M
• Basic if [H+
] < 10-7
M
Acids and Bases
Lowery definition:
• Acid is a substance that can donate a proton.
• Base is a substance that can accept a proton.
HA + H2O H3O+
+ A-
/OH-
Acid Base Conjugate Conjugate
Acid Base
or
HA A-
+ H+
Acid Conjugate Conjugate
Base Acid
If you establish equilibrium, changes in [H+
] will shift
the ratio of HA and A-
.
By adding more H+
, A-
will be consumed
forming HA.
If there is sufficient [A-
], the extra H+
will also be
consumed and the [H+
] will not change.



 A
H
HA
Acid strength is specified by its dissociation constant
Molar concentration
for: HA + H2O H3O+
+ A-
• reactants products
HA H3O+
A-
H2O
a measure of relative proton affinities for each conjugate acid
base pair.
O]
[H
]
HA
[
]
][A
O
[H
2
-
3


a
K
These ratios are
What to do about the water!
The concentration of H2O remains almost unchanged especially
in dilute acid solutions.
What is the concentration of H2O?
Remember the definition: Moles per liter
1 mole of H2O = 18 g = 18 ml
1000 g/liter
ml
g 1
1 
M
mol
g
g
5
.
55
/
18
1000

]
[
]
][
[
]
[ 2
HA
A
H
O
H
K
Ka




From now on we will drop the a, in Ka
Weak acids (K<1)
Strong acids (K>1)
Strong acid completely dissociates: Transfers all its
protons to
H2O to form H3O+
HA H+
+ A-
Weak Acids
Weak acids do not completely dissociate:
They form an equilibrium:



 H
A
HA
If we ADD more H+
, the equilibrium shifts to
form more HA using up A-
that is present.
Dissociation of H2O



 OH
H
O
H2
Water also dissociates [H2O] = 55.5
]
[
]
][
[
2O
H
OH
H
K



2
14
M
10
]
][
[ 



 OH
H
Kw
Ionization constant for water
Since there is equal amounts of [H+
] and [OH-
]
M
10
x
1
]
[
]
[ 7




 OH
H
This is neutral
At [H+] above this concentration the solution is ACIDIC
At [H+] below this concentration the solution is BASIC
2
10 1 ] [
 

x H
9
10
1
]
[ 

 x
H
[H+
] pH
10-7
= 7
10-3
= 3
10-2
= 2
10-10
= 10
5x10-4
= 3.3
7x10-6
= 5.15
3.3x10-8
= 7.48
pH = -Log[H+
]
It is easier to think in log
of concentrations but it
takes practice!!
Relationship between pH and [H+
] / [OH-
] concentration
Observation
If you add .01 ml i.e 1/100 ml of 1M HCl to 1000 ml
of water, the pH of the water drops from 7 to 5!!
i.e 100 fold increase in H+
concentration: Log = 2
change.
Problem:
Biological properties change with small changes in
pH, usually less than 1 pH unit.
How does a system prevent fluctuations in pH?
Buffers
A buffer can resist pH changes if the pH is at or near a weak
acid pK value.
Buffer range: the pH range where maximum resistance to pH
change occurs when adding acid or base. It is = +
1 pH from
the weak acid pK
If pK is 4.8 the buffering range is 3.8 5.8
Why?
Henderson - Hasselbalch equation
]
[
]
][
[
HA
A
H
K



From
]
[
]
[
]
[ 


A
HA
K
H
Rearrange
Take (-)Log of each
]
[
]
[
log
log
HA
A
K
pH




]
[
]
[
log
HA
A
pK
pH



Above and below this range there is insufficient
amount of conjugate acid or base to combine with
the base or acid to prevent the change in pH.
[HA]
]
[A
log
pK
pH
-


1
10
10
1
from
varies
ratio
]
HA
[
]
[A


For weak acids
HA A-
+ H+
This equilibrium depends on concentrations of each component
.
If [HA] = [A-
] or 1/2 dissociated
Then 0
1
log
]
[
]
[
log 


HA
A
By definition the pK is the pH where [HA] = [A-
] :
50% dissociated
: pH = pK
The buffer effect can be seen in a titration curve.
To a weak acid salt, CH3C00-,
add HC1 while monitoring pH vs. the
number of equivalents of acid added.
or
do the opposite with base.
Buffer capacity: the molar amount of acid which the buffer can
handle without significant changes in pH.
i.e
1 liter of a .01 M buffer can not buffer 1 liter of a 1 M solution of
HCl
but
1 liter of a 1 M buffer can buffer 1 liter of a .01 M solution of HCl
Acid and bases and its strength by using ph scale lecture_4.ppt
Distribution curves for acetate and acetic acid
Titration curve for phosphate
Table 2-3
Dissociation constants and pK’s of Acids & buffers
Acid K pK
Oxalic 5.37x10-2
1.27
H3PO4 7.08x10-3
2.15
Succinic Acid 6.17x10-5
4.21 (pK1)
Succinate 2.29x10-6
5.65 (pK2)
H2PO4
-
1.51x10-7
6.82
NH4
+
5.62x10-10
9.25
Glycine 1.66x10-10
9.78
Acid and bases and its strength by using ph scale lecture_4.ppt
You will be asked to solve Henderson -
Hasselbalch type problems:
You may be asked the pH, pK, the ratio of acid or base or solve for
the final concentrations of each.
Exams Problems
[HA]
]
[A
log
pK
pH
-


The 6 step approach
1. Write the Henderson + Hasselbalch equation.
2. Write the acid base equation
3. Make sure either an H+
or OH-
is in the equation.
3. Find out what you are solving for
4. Write down all given values.
5. Set up equilibrium conditions.
6. Plug in H + H equation and solve.
What is the pH of a solution of that contains 0.1M CH3C00-
and 0.9 M CH3C00H?
1) pH = pK + Log [A-
]
[HA]
2) CH3C00H CH3C00-
+ H+
3) Find pH
4) pK = 4.76 A-
= 0.1 M HA = 0.9 M
5) Already at equilibrium
6) X = 4.76 + Log 0.1
0.9
What would the concentration of CH3C00-
be at pH 5.3
if 0.1M CH3C00H was adjusted to that pH.
1) pH = pK + Log [A-
]
[HA]
2) CH3C00H CH3C00-
+ H+
3) Find equilibrium value of [A-
] i.e [CH3C00-
]
4) pH = 5.3; pK = 4.76
5) Let X = amount of CH3C00H dissociated at equilibrium
[A-
] = [X]
[HA] = [0.1 - X]
6) 5.3 = 4.76 + Log [X]
[0.1 - X]
Now solve.
Blood Buffering System
• Bicarbonate most significant buffer
• Formed from gaseous CO2
CO2 + H2O <-> H2CO3
H2CO3 <-> H+
+ HCO3
-
• Normal value blood pH 7.4
• Deviations from normal pH value lead to
acidosis

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Acid and bases and its strength by using ph scale lecture_4.ppt

  • 1. BCHS 3304: General Biochemistry I, Section 07553 Spring 2003 1:00-2:30 PM Mon./Wed. AH 101 http://www.uh.edu/sibs/faculty/glegge Instructor: Glen B. Legge, Ph.D., Cambridge UK Phone: 713-743-8380 Fax: 713-743-2636 E-mail: glegge@uh.edu Office hours: Mon. and Wed. (2:30-4:00 PM) or by appointment 353 SR2 (Science and Research Building 2) 1
  • 2. SIBS program • Monday Chat room on Webct: 8:00-10:00 PM Tuesday Workshop: 5:00-7:00 PM in 101 AH Wednesday Office Hours: 3:00-4:45 PM in 114 S Wednesday Workshop: 5:00-7:00 PM in 116 SR1 • Students must activate their webct accounts. • SIBS will not print out exam reviews • Jerry Johnson (BCHS 3304 workshops) contact email: MYSTIK1775@aol.com
  • 4. Ionization of water • Although neutral water has a tendency to ionize H2O <-> H+ + OH- • The free proton is associated with a water molecule to form the hydronium ion H3O+ • High ionic mobility due to proton jumping
  • 5. Proton Jumping Large proton and hydroxide mobility • H3O+ : 362.4 x 10-5 cm2 •V-1 •s-1 • Na+ : 51.9 x 10-5 cm2 •V-1 •s-1 • Hydronium ion migration; hops by switching partners at 1012 per second
  • 6. Equilibrium expression • Described by: K = [H+ ][OH- ] [H2O] • Where K is the dissociation constant • Considering [H2O] constant yields Kw = [H+ ][OH- ]
  • 7. Kw Kw = [H+ ][OH- ] • Where Kw is the ionization constant of water • For pure water ionization constant is 10-14 M2 at 25º • For pure water [H+ ] = [OH- ] = (Kw)1/2 = 10-7 M
  • 8. Acids and bases • For pure water (neutral) [H+ ] = [OH- ] = (Kw)1/2 = 10-7 M • Acidic if [H+ ] > 10-7 M • Basic if [H+ ] < 10-7 M
  • 9. Acids and Bases Lowery definition: • Acid is a substance that can donate a proton. • Base is a substance that can accept a proton. HA + H2O H3O+ + A- /OH- Acid Base Conjugate Conjugate Acid Base or HA A- + H+ Acid Conjugate Conjugate Base Acid
  • 10. If you establish equilibrium, changes in [H+ ] will shift the ratio of HA and A- . By adding more H+ , A- will be consumed forming HA. If there is sufficient [A- ], the extra H+ will also be consumed and the [H+ ] will not change.     A H HA
  • 11. Acid strength is specified by its dissociation constant Molar concentration for: HA + H2O H3O+ + A- • reactants products HA H3O+ A- H2O a measure of relative proton affinities for each conjugate acid base pair. O] [H ] HA [ ] ][A O [H 2 - 3   a K These ratios are
  • 12. What to do about the water! The concentration of H2O remains almost unchanged especially in dilute acid solutions. What is the concentration of H2O? Remember the definition: Moles per liter 1 mole of H2O = 18 g = 18 ml 1000 g/liter ml g 1 1  M mol g g 5 . 55 / 18 1000 
  • 13. ] [ ] ][ [ ] [ 2 HA A H O H K Ka     From now on we will drop the a, in Ka Weak acids (K<1) Strong acids (K>1) Strong acid completely dissociates: Transfers all its protons to H2O to form H3O+ HA H+ + A-
  • 14. Weak Acids Weak acids do not completely dissociate: They form an equilibrium:     H A HA If we ADD more H+ , the equilibrium shifts to form more HA using up A- that is present.
  • 15. Dissociation of H2O     OH H O H2 Water also dissociates [H2O] = 55.5 ] [ ] ][ [ 2O H OH H K    2 14 M 10 ] ][ [      OH H Kw Ionization constant for water
  • 16. Since there is equal amounts of [H+ ] and [OH- ] M 10 x 1 ] [ ] [ 7      OH H This is neutral At [H+] above this concentration the solution is ACIDIC At [H+] below this concentration the solution is BASIC 2 10 1 ] [    x H 9 10 1 ] [    x H
  • 17. [H+ ] pH 10-7 = 7 10-3 = 3 10-2 = 2 10-10 = 10 5x10-4 = 3.3 7x10-6 = 5.15 3.3x10-8 = 7.48 pH = -Log[H+ ] It is easier to think in log of concentrations but it takes practice!!
  • 18. Relationship between pH and [H+ ] / [OH- ] concentration
  • 19. Observation If you add .01 ml i.e 1/100 ml of 1M HCl to 1000 ml of water, the pH of the water drops from 7 to 5!! i.e 100 fold increase in H+ concentration: Log = 2 change. Problem: Biological properties change with small changes in pH, usually less than 1 pH unit. How does a system prevent fluctuations in pH?
  • 20. Buffers A buffer can resist pH changes if the pH is at or near a weak acid pK value. Buffer range: the pH range where maximum resistance to pH change occurs when adding acid or base. It is = + 1 pH from the weak acid pK If pK is 4.8 the buffering range is 3.8 5.8 Why?
  • 21. Henderson - Hasselbalch equation ] [ ] ][ [ HA A H K    From ] [ ] [ ] [    A HA K H Rearrange Take (-)Log of each ] [ ] [ log log HA A K pH     ] [ ] [ log HA A pK pH   
  • 22. Above and below this range there is insufficient amount of conjugate acid or base to combine with the base or acid to prevent the change in pH. [HA] ] [A log pK pH -   1 10 10 1 from varies ratio ] HA [ ] [A  
  • 23. For weak acids HA A- + H+ This equilibrium depends on concentrations of each component . If [HA] = [A- ] or 1/2 dissociated Then 0 1 log ] [ ] [ log    HA A By definition the pK is the pH where [HA] = [A- ] : 50% dissociated : pH = pK
  • 24. The buffer effect can be seen in a titration curve. To a weak acid salt, CH3C00-, add HC1 while monitoring pH vs. the number of equivalents of acid added. or do the opposite with base. Buffer capacity: the molar amount of acid which the buffer can handle without significant changes in pH. i.e 1 liter of a .01 M buffer can not buffer 1 liter of a 1 M solution of HCl but 1 liter of a 1 M buffer can buffer 1 liter of a .01 M solution of HCl
  • 26. Distribution curves for acetate and acetic acid
  • 27. Titration curve for phosphate
  • 28. Table 2-3 Dissociation constants and pK’s of Acids & buffers Acid K pK Oxalic 5.37x10-2 1.27 H3PO4 7.08x10-3 2.15 Succinic Acid 6.17x10-5 4.21 (pK1) Succinate 2.29x10-6 5.65 (pK2) H2PO4 - 1.51x10-7 6.82 NH4 + 5.62x10-10 9.25 Glycine 1.66x10-10 9.78
  • 30. You will be asked to solve Henderson - Hasselbalch type problems: You may be asked the pH, pK, the ratio of acid or base or solve for the final concentrations of each. Exams Problems [HA] ] [A log pK pH -  
  • 31. The 6 step approach 1. Write the Henderson + Hasselbalch equation. 2. Write the acid base equation 3. Make sure either an H+ or OH- is in the equation. 3. Find out what you are solving for 4. Write down all given values. 5. Set up equilibrium conditions. 6. Plug in H + H equation and solve.
  • 32. What is the pH of a solution of that contains 0.1M CH3C00- and 0.9 M CH3C00H? 1) pH = pK + Log [A- ] [HA] 2) CH3C00H CH3C00- + H+ 3) Find pH 4) pK = 4.76 A- = 0.1 M HA = 0.9 M 5) Already at equilibrium 6) X = 4.76 + Log 0.1 0.9
  • 33. What would the concentration of CH3C00- be at pH 5.3 if 0.1M CH3C00H was adjusted to that pH. 1) pH = pK + Log [A- ] [HA] 2) CH3C00H CH3C00- + H+ 3) Find equilibrium value of [A- ] i.e [CH3C00- ] 4) pH = 5.3; pK = 4.76 5) Let X = amount of CH3C00H dissociated at equilibrium [A- ] = [X] [HA] = [0.1 - X] 6) 5.3 = 4.76 + Log [X] [0.1 - X] Now solve.
  • 34. Blood Buffering System • Bicarbonate most significant buffer • Formed from gaseous CO2 CO2 + H2O <-> H2CO3 H2CO3 <-> H+ + HCO3 - • Normal value blood pH 7.4 • Deviations from normal pH value lead to acidosis

Editor's Notes

  • #34: Metabolic acidosis e.g. latic acid production Respiratory acidosis e.g. hyperventilating Mention histidine as only a.a. with pKa close to neutral