Basics for culturing and antimicrobial sensitivity testing in bacteriology

BASICS FOR CULTURING AND
ANTIMICROBIAL SENSITIVITY TESTING
IN BACTERIOLOGY
DR.T.V.RAO MD
6/16/2018DR.T.V.RAO MD 1

BACTERIOLOGY THE MOST COMPLEX
SCIENCE IN MEDICINE
6/16/2018DR.T.V.RAO MD 2

PREPARING THE
CULTURE
PLATES
• Prepare agar plates
according to the
manufacturer’s
instructions. Media for
fastidious organisms are
supplemented with 5%
defibrinated horse blood
or 5% defibrinated horse
blood and 20 mg/L
6/16/2018DR.T.V.RAO MD 3

PREPARING THE
CULTURE PLATES WITH
MEDIA
• Pour sufficient molten agar into 90
mm sterile petri dishes to give a
mean depth of 4.0 mm ± 0.5 mm
(25 ml).
• Dry the surface of the agar to
remove excess moisture before use.
The length of time needed to dry the
surface of the agar depends on
whether a fan-assisted drying
cabinet or `still air’ incubator is
used and whether (and under what
conditions) plates are dried before
6/16/2018DR.T.V.RAO MD 4

IMPORTANT: DO
NOT OVER-DRY
PLATES
• Ideally, plates should be
stored in vented plastic
boxes at 8-10°C prior to
use. Alternatively, plates
may be stored at 4-8°C
in sealed plastic bags.
Plate drying, method of
storage and storage time
should be determined by
individual laboratories as
part of their
6/16/2018DR.T.V.RAO MD 5

PREVENTING
CONDENSATION IS
ESSENTIAL FOR
BETTER CULTIVATION
• Quality Assurance
Programme. In
particular, tests should
confirm that excess
moisture is not
produced in a sealed
environment or that
plates are not over-
dried in an unsealed
environment
6/16/2018DR.T.V.RAO MD 7

STANDARD STRAINS TO
BE USED IN DAY TO DAY
WORK FOR QUALITY
ASSURANCE
• The control strains listed
include sensitive strains
that have been chosen to
monitor test
performance, and
resistant strains which
can also be used to
confirm that the method
will detect a mechanism
of resistance, for
example, H. influenzae
ATCC 49247 is resistant
to β-lactam antibiotics.6/16/2018DR.T.V.RAO MD 8

PREPARING THE STANDARD STRAINS
IN BACTERIOLOGY LABORATORY
6/16/2018DR.T.V.RAO MD 10

STORING THE
QUALITY CONTROL
STRAINS
• To minimize the risk of
mutations store control strains
at -20°C (not adequate for
fastidious organisms) or
preferably at -70°C, in glycerol
broth, on beads. Ideally, two
vials of each control should be
stored, one as an `in-use’
supply the other for archiving.
Every week a bead from the `in-
use’ vial should be subcultured
6/16/2018DR.T.V.RAO MD 11

WORKING WITH
STANDARD
STRAINS
• From this pure culture,
prepare one subculture
for each of the
following 7 days.
Alternatively, for
fastidious organisms
that will not survive on
plates for 7 days
subculture the strain
daily for no more than
6 days
6/16/2018DR.T.V.RAO MD 12

PREPARATION
OF INOCULUM
• This standardized method of
testing has been developed with
an inoculum giving semiconfluent
growth of colonies after
overnight incubation. Use of an
inoculum that yields semi-
confluent growth has the
advantage that an incorrect
inoculum can easily be observed.
A denser inoculum will result in
reduced zones of inhibition and a
decreased inoculum will have the
opposite effect. The following
6/16/2018DR.T.V.RAO MD 13

PREPARATION OF 0.5
MCFARLAND
STANDARD
• Add 0.5 ml of 0.048M
BaCL2 (1.17% w/v
BaCl2.2H20) to 99.5 ml
of 0.18M H2SO4 (1% w/v)
with constant stirring.
Distribute the standard
into screw cap tubes of
the same size and with
the same volume as those
used in growing the broth
cultures. Seal the tubes
tightly to prevent loss by
evaporation
6/16/2018DR.T.V.RAO MD 14

MAKING AND WORKING WITH
MCFARLAND STANDARDS
6/16/2018DR.T.V.RAO MD 15

STORING OF
MACFARLAND
STANDARDS
• .Store protected from light
at room temperature.
Vigorously agitate the
turbidity standard on a
vortex mixer before use.
Standards may be stored
for up to six months after
which time they should be
discarded. Alternatively,
prepared
•
6/16/2018DR.T.V.RAO MD 16

INOCULUM PREPARATION BY THE
GROWTH METHOD (FOR NON-
FASTIDIOUS ORGANISMS, E.G.
ENTEROBACTERIACEAE,
PSEUDOMONAS SPP. &
STAPHYLOCOCCI)
• Touch at least four
morphologically similar
colonies with a sterile loop.
Transfer growth into Iso-
Sensitest broth or
equivalent that has been
shown not to interfere with
the test. Incubate broth
with shaking at 35-37°C
until the visible turbidity is
equal to or greater than
the 0.5 McFarland
6/16/2018DR.T.V.RAO MD 17

INOCULUM PREPARATION BY THE
DIRECT COLONY SUSPENSION METHOD
(THE METHOD OF CHOICE FOR
FASTIDIOUS ORGANISMS, E.G.
HAEMOPHILUS SPP., N. GONORRHOEAE
AND S. PNEUMONIAE
• Colonies are taken directly
from the plate into Iso-
Sensitest broth (or
equivalent) or sterile distilled
water. The suspension
should match or exceed the
0.5 McFarland standard. NB.
With some organisms
production of an even
suspension of the required
turbidity is difficult and
growth in broth is a more
satisfactory option.
6/16/2018DR.T.V.RAO MD 20

ADJUSTMENT OF THE
ORGANISM SUSPENSION
TO THE DENSITY OF THE
0.5 MCFARLAND
STANDARD
• Adjust the density of the
organism suspension
prepared as in 3.1.2 or
3.1.3 to equal that of the
0.5 McFarland standard by
adding sterile distilled
water. To aid comparison,
compare the test and
standard against a white
background with a
contrasting black line. NB.
Suspension should be
6/16/2018DR.T.V.RAO MD 21

PHOTOMETRIC
STANDARDIZATION OF
TURBIDITY OF
SUSPENSIONS
• A photometric method of
preparing inocula was
described by Moosdeen et al
(1988)1 and from this the
following simplified
procedure has been
developed.
• Suspend colonies (touch 4-
5 when possible) in 3 mL
distilled water or broth in a
100 x 12 mm glass tube
(note that tubes are not
reused) to give just visible
turbidity. Do not leave the
organisms standing in water.
It is essential to get an even
suspension
6/16/2018DR.T.V.RAO MD 22

INOCULATION OF
AGAR PLATES
• Use the adjusted suspension
within 15 min to inoculate
plates by dipping a sterile
cottonwool swab into the
suspension and remove the
excess by turning the swab
against the side of the
container. Spread the
inoculum evenly over the
entire surface of the plate by
swabbing in three directions.
Allow the plate to dry before
6/16/2018DR.T.V.RAO MD 24

APPLICATION OF
DISCS
•Discs should be firmly
applied to the surface
of an agar plate which
has previously been
dried. The contact with
the agar should be
even. A 90 mm plate
will accommodate six
discs without
unacceptable
overlapping of zones
6/16/2018DR.T.V.RAO MD 27

STORAGE AND HANDLING OF
DISCS• Loss of potency from discs will result in reduced zones of inhibition.
To avoid the loss of potency due to inadequate handling the following
procedures are essential:
• Store discs in sealed containers with a desiccant and protected from
light (this is particularly important for some light-susceptible agents
such as metronidazole, chloramphenicol and quinolones).
• Store stocks at -20°C except for drugs known to be unstable at this
temperature. If it is not possible, store discs at < 8°C.
• Store working supplies of discs at < 8°C.
• To prevent condensation, allow discs to warm to room temperature
before opening containers.
•
6/16/2018DR.T.V.RAO MD 29

INCUBATION OF
INOCULATED
PLATES
• If plates are left at
room temperature,
after discs have been
applied, larger zones
of inhibition may be
obtained compared
with zones produced
when plates are
incubated
immediately. Plates
therefore should be
incubated within 15
6/16/2018DR.T.V.RAO MD 30

MEASURING
ZONES
• Measure (mm) diameters of zones of
inhibition (edge should be taken as the
point of inhibition as judged by the
naked eye) of the control strain and
test with a ruler, calipers or an
automated zone reader (a template
may also be used for interpreting
susceptibility. Tiny colonies at the
edge, films of growth due to swarming
of Proteus spp. and slight growth within
sulphonamide or trimethoprim zones
should be ignored. Colonies growing
within the zone of inhibition should be
subculture and identified and the test
repeated if necessary.6/16/2018DR.T.V.RAO MD 31

SUSCEPTIBILITY TESTING OF
ANAEROBIC AND
FASTIDIOUS BACTERIA
• Anaerobic bacteria
• The dynamics of the disc diffusion
technique, in which the size of the
zone is related to a critical
concentration of antimicrobial
agent, a critical population of
organisms and a critical time,
makes it an unsuitable method for
testing slow-growing organisms.
The BSAC Working Party
recommendation for slow growing
anaerobic organisms is to test for
susceptibility by MIC
determinations.
6/16/2018DR.T.V.RAO MD 32

E TEST FOR ANTIBIOTIC SENSITIVITY
TESTING
• The media recommended for the
Etest by the manufacturer is
WilkinsChalgren with 5% sheep
blood or Brucella agar with 5% sheep
blood and 1 mg/L vitamin K. Sheep
blood is not often used in the UK
and horse blood can be substituted,
but results for control organisms
may be slightly different (follow
Etest technical guide instructions).
Anaerobes that grow well within 24
hours can be tested by disc diffusion
6/16/2018DR.T.V.RAO MD 33

ANAEROBIC
CULTURE NEED
HIGHER QUALITY
CONTROLLED
MEDIUM
• The medium of choice for
susceptibility testing of
anaerobic bacteria is
WilkinsChalgren agar
supplemented with 5%
horse blood. This
medium adequately
supports the growth of
most fast growing
anaerobic bacteria and
has no adverse affect on
the activity of
antimicrobial agents.
•
6/16/2018DR.T.V.RAO MD 34

•Program Created by Dr.T.V.Rao MD for
improving the skills in Diagnostic Microbiology
with current resources on newer developments
from WHO/CDC and Google resources
• Email
• doctortvrao@gmail.com
6/16/2018DR.T.V.RAO MD 35

Basics for culturing and antimicrobial sensitivity testing in bacteriology

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Basics for culturing and antimicrobial sensitivity testing in bacteriology