This document describes a study that developed and optimized a pulsatile drug delivery system containing pantoprazole sodium using a 32 full factorial design approach. Six core tablets were initially prepared and evaluated. Amounts of microcrystalline cellulose (MCC) and sodium starch glycolate (SSG) were selected as independent variables in the factorial design to study their effects on tablet properties. The optimized core formulation (f3) was then coated with Eudragit S to produce pulsatile tablets. In vitro dissolution studies showed the coated tablets remained intact in acid media and released drug after reaching the intestine, indicating successful development of a pulsatile delivery system for pantoprazole sodium.