ELIXIR Node poster Italy 2014

ELIXIR:
The
Italian
Node

The
Italian
node
is
a
virtual
node
configured
as
a
Joint
Research
Unit
(JRU)

called
Elixir-‐ITA
that
will
coordinate
the
delivery
of
existing
bioinformatics

services
at
the
national
level
and
will
provide
many
leading
services
to
the

ELIXIR
infrastructure.
Elixir-‐ITA
is
led
by
National
Research
Council
(CNR)

of
Italy
and
brings
together
12
partners
including
several
universities
as

Collaborating
organisations

National
Research
Council
(CNR)

Bioinformatics
resources
for
the
management,
analysis
and

understanding
of
Omics
data
in
Medicine,
Biology,
and
Agricultural

Sciences

University
of
Rome
“Sapienza”

Resources
for
the
analysis
of
immunoglobulin
structures
and

sequences.
Resources
for
the
analysis
of
the
epigenome

(alternative
splicing,
miRNAs
and
lncRNAs)

University
of
Rome
“Tor
Vergata”

Assembling
and
curating
the
networks
of
physical
and
logical

relationships
among
gene
products

University
of
Milan

Bioinformatics
tools
and
resources
for
the
analysis
of
gene

expression
regulation

University
of
Milan
“Bicocca”

Resources
for
the
prediction
of
gene
structure
and
regulatory

mechanisms.

Training
on
computational
methods
and
tools
for

sequence
and
network
analysis
in
omics
sciences

University
of

Tuscia

Genomics
and
epigenetics
in
Livestock

Resources

Services
we
provide
at
the
present
include:

Description

ASPicDB
(alternative
splicing
patterns
in
the
human
and
other

genomes)

SpliceAid-‐F
(splicing
regulatory
factors
and
their
binding
sites)

UTRdb/UTRsite
(eukaryotic
mRNA
untranslated
regions
and

their
regulatory
elements)

Mitozoa
(database
of
comparative
mitogenomics
in

metazoans

ITSoneDB
(database
of
fungal
ribosomal
RNA
Internal

Transcribed
Spacer
sequences)

DIGIT
(database
of
immunoglobulin
variable
sequences)

MAISTAS
(modeling
and
assessment
of
splicing
isoforms)

MobiDB
(database
of
protein
disorder
and
mobile
regions)

PIGS
(prediction
of
Immunoglobulin
structures)

The
grape
genome
browser

Contact

Prof.
Graziano
Pesole

Director
of
the
Institute
of
Biomembranes
and
Bioenergentics

(CNR)
and
Professor
of
Molecular
Biology
at
the
University
of

Bari

g.pesole@ibbe.cnr.it

Web
address

http://srv00.ibbe.cnr.it/ASPicDB/

http://srv00.ibbe.cnr.it/SpliceAidF/

http://www.ba.itb.cnr.it/UTR/

http://srv00.ibbe.cnr.it/mitozoa/

http://itsonedb.ba.itb.cnr.it:8080/ITS1/

http://biocomputing.it/digit/

http://maistas.bioinformatica.crs4.it/

http://mobidb.bio.unipd.it/

http://www.biocomputing.it/pigs/

http://genomes.cribi.unipd.it/

well
as
leading
high-‐performance
computing
partners
such
as
CINECA,

CRS4,
GARR
and
INFN.
The
ELIXIR
Italy
Node
is
going
to
establish
a

robust
procedure,
based
on
an
open
call
and
a
peer
review
system,
to

allow
additional
participants
to
join
with
their
relevant
resources.

University
of

Padua

Prediction
and
analysis
of
genes,
genetic
variants
and
protein

structures
at
genomic
scale.

University
of
Bologna
“Alma
Mater”

Prediction
of
the
effects
of
protein
variations
on
human
diseases

and
on
protein
stability.
Integration
of
the
functional
effects
of

genetic
variations
in
a
Systems
Biology
context.

CINECA

Implementation
and
optimization
of
automated
analysis

workflows
for
NGS
applications
on
distributed
environments
and

data
repository.

National
Institute
of
Nuclear
Physics
(INFN)

Grid
and
Cloud
computing
resources
provider,
orchestration
of

computational
workflows
in
a
distributed
environment,
application

porting
and
user
support.

GARR

High-‐capacity
network
and
e-‐Infrastructure
support
in

coordination
with
worldwide
NRENs
and
e-‐Infrastructure
providers

CRS4

A
Software
as
a
Service
(SaaS)
platform
for
NGS
data
analysis

using
Galaxy
as
a
front
end/workflow
online,
iRODS
for
data
grid

management,
and

Hadoop
as
computational
engine.

ELIXIR Node poster Italy 2014

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