Molecular Geometry.ppt
- 1. Molecular Geometries and Bonding Chapter 9 Molecular Geometries and Bonding Theories
- 2. Molecular Geometries and Bonding Molecular Shapes • We’ve learned to draw Lewis structures and account for all the valence electrons in a molecule. • But: Lewis structures are two dimensional and molecules are 3 dimensional objects. • The 3D structure is absolutely critical for understanding molecules.
- 3. Molecular Geometries and Bonding Molecular Shapes • geometry & shape of molecule critical • we can easily predict the 3D structure of a molecule just by adding up: • bound atoms + lone pairs
- 4. Molecular Geometries and Bonding What Determines the Shape of a Molecule? • atoms and lone pairs take up space and prefer to be as far from each other as possible • shape can be predicted from simple geometry lone pair bonds
- 5. Molecular Geometries and Bonding “Things” • The central atom has four “things” around it. A “thing” is an atom or a lone pair of electrons. • # things = atoms plus lone pairs
- 6. Molecular Geometries and Bonding Valence Shell Electron Pair Repulsion Theory (VSEPR) “The best arrangement of a given number of things is the one that minimizes the repulsions among them.”
- 7. Molecular Geometries and Bonding Geometries These are the geometries for two through six things around a central atom. You must learn these! number of things arrangement geometry bond angles
- 8. Molecular Geometries and Bonding Geometries • All one must do is count the number of “things” in the Lewis structure. • The geometry will be that which corresponds to that number of “things.”
- 9. Molecular Geometries and Bonding Molecular Geometries • The geometry is often not the shape of the molecule, however. • The “shape” is defined by the positions of only the atoms in the molecules, not the lone pairs.
- 10. Molecular Geometries and Bonding Geometries vs. shape Within each geometry, there might be more than one shape.
- 11. Molecular Geometries and Bonding Linear geometry two things • In this geometry, there is only one molecular geometry: linear. • NOTE: If there are only two atoms in the molecule, the molecule will be linear no matter what the geometry is. things geometry atoms lone pairs shape example
- 12. Molecular Geometries and Bonding Trigonal Planar geometry 3 things • There are two molecular geometries: – Trigonal planar, if there are no lone pairs – Bent, if there is a lone pair. things geometry atoms lone pairs shape example
- 13. Molecular Geometries and Bonding Lone pairs and Bond Angle • Lone pairs are physically larger than atoms. • Therefore, their repulsions are greater; this tends to decrease bond angles in a molecule.
- 14. Molecular Geometries and Bonding Multiple Bonds and Bond Angles • Double and triple bonds place greater electron density on one side of the central atom than do single bonds. • Therefore, they also affect bond angles.
- 15. Molecular Geometries and Bonding Tetrahedral geometry 4 things Things geometry atoms lone pairs shape example • There are three molecular geometries: – Tetrahedral, if no lone pairs – Trigonal pyramidal if one is a lone pair – Bent if there are two lone pairs
- 16. Molecular Geometries and Bonding Trigonal Bipyramidal geometry 5 things • There are two distinct positions in this geometry: – Axial – Equatorial
- 17. Molecular Geometries and Bonding Trigonal Bipyramidal geometry Lower-energy conformations result from having lone pairs in equatorial, rather than axial, positions in this geometry.
- 18. Molecular Geometries and Bonding Trigonal Bipyramidal geometry Things geometry atoms lone pairs shape example • There are four distinct molecular geometries in this domain: – Trigonal bipyramidal – Seesaw – T-shaped – Linear
- 19. Molecular Geometries and Bonding Octahedral geometry 6 things • All positions are equivalent in the octahedral domain. • There are three molecular geometries: Things geometry atoms lone shape example pairs
- 20. Molecular Geometries and Bonding Larger Molecules In larger molecules, we talk about the geometry about a particular atom rather than the geometry of the molecule as a whole.
- 21. Molecular Geometries and Bonding Larger Molecules The structure of the whole molecule is only clear when we look at the whole molecule. But the geometry about each atom still follows the same rules!
- 22. Molecular Geometries and Bonding Polarity • In Chapter 8 we discussed bond dipoles. • polar bonds versus polar molecules. We must think about the molecule as a whole.
- 23. Molecular Geometries and Bonding Polarity By adding the individual bond dipoles, one can determine the overall dipole moment for the molecule.
- 25. Molecular Geometries and Bonding Overlap and Bonding • covalent bonds form when electrons are “shared.” • But how, when the electrons are in these atomic orbitals? Do atomic orbitals overlap? • Yes.
- 26. Molecular Geometries and Bonding Overlap and Bonding • Increased overlap brings the electrons and nuclei closer together while simultaneously decreasing electron- electron repulsion. • However, if atoms get too close, the internuclear repulsion greatly raises the energy.
- 27. Molecular Geometries and Bonding Hybrid Orbitals But how do you get tetrahedral, trigonal bipyramidal, and other geometries when the atomic orbitals seem to be at right angles from each other all the time?
- 28. Molecular Geometries and Bonding Hybrid Orbitals • Consider beryllium: – In its ground electronic state, it would not be able to form bonds because it has no singly-occupied orbitals.
- 29. Molecular Geometries and Bonding Hybrid Orbitals But if it absorbs the small amount of energy needed to promote an electron from the 2s to the 2p orbital, it can form two bonds.
- 30. Molecular Geometries and Bonding Hybrid Orbitals • Mixing the s and p orbitals yields two degenerate orbitals that are hybrids of the two orbitals. – These sp hybrid orbitals have two lobes like a p orbital. – One of the lobes is larger and more rounded as is the s orbital.
- 31. Molecular Geometries and Bonding Hybrid Orbitals • These two degenerate orbitals would align themselves 180 from each other. • This is consistent with the observed geometry of beryllium compounds: linear.
- 32. Molecular Geometries and Bonding Hybrid Orbitals • With hybrid orbitals the orbital diagram for beryllium would look like this. • The sp orbitals are higher in energy than the 1s orbital but lower than the 2p.
- 33. Molecular Geometries and Bonding Hybrid Orbitals Using a similar model for boron leads to…
- 34. Molecular Geometries and Bonding Hybrid Orbitals …three degenerate sp2 orbitals.
- 35. Molecular Geometries and Bonding Hybrid Orbitals With carbon we get…
- 36. Molecular Geometries and Bonding Hybrid Orbitals …four degenerate sp3 orbitals.
- 37. Molecular Geometries and Bonding Hybrid Orbitals For geometries involving expanded octets on the central atom, we must use d orbitals in our hybrids.
- 38. Molecular Geometries and Bonding Hybrid Orbitals This leads to five degenerate sp3d orbitals… …or six degenerate sp3d2 orbitals.
- 39. Molecular Geometries and Bonding Hybrid Orbitals Once you know the number of things around an atom, you know the hybridization state of the atom if you can count letters up to six.
- 40. Molecular Geometries and Bonding The exam • Chapters 7-9 • All of chap 7 • All of chap 8 • Chap 9 up to hybridization
- 41. Molecular Geometries and Bonding The exam • Chapters 7 • Effective nuclear charge • Sizes of atoms • Sizes of ions • Trends in ionization energy • Electronegativity
- 42. Molecular Geometries and Bonding The exam • Chapters 8 • Lewis structures • Resonance • Bond enthalpies
- 43. Molecular Geometries and Bonding The exam • Chapter 9 Molecular geometry Molecular shape Hybridization
- 44. Molecular Geometries and Bonding Valence Bond Theory • Hybridization is a major player in this approach to bonding. • There are two ways orbitals can overlap to form bonds between atoms.
- 45. Molecular Geometries and Bonding Sigma () Bonds • Sigma bonds are characterized by – Head-to-head overlap. – Cylindrical symmetry of electron density about the internuclear axis.
- 46. Molecular Geometries and Bonding Pi () Bonds • Pi bonds are characterized by – Side-to-side overlap. – Electron density above and below the internuclear axis.
- 47. Molecular Geometries and Bonding Single Bonds Single bonds are always bonds, because overlap is greater, resulting in a stronger bond and more energy lowering.
- 48. Molecular Geometries and Bonding Multiple Bonds In a multiple bond one of the bonds is a bond and the rest are bonds.
- 49. Molecular Geometries and Bonding Multiple Bonds • Example: formaldehyde an sp2 orbital on carbon overlaps in fashion with the corresponding orbital on the oxygen. • The unhybridized p orbitals overlap in fashion.
- 50. Molecular Geometries and Bonding Multiple Bonds In triple bonds, as in acetylene, two sp orbitals form a bond between the carbons, and two pairs of p orbitals overlap in fashion to form the two bonds.
- 51. Molecular Geometries and Bonding Delocalized Electrons: Resonance When writing Lewis structures for species like the nitrate ion, we draw resonance structures to more accurately reflect the structure of the molecule or ion. - - - - ¸ - ¸ - ¸ + + +
- 52. Molecular Geometries and Bonding Delocalized Electrons: Resonance • each of the four atoms in the nitrate ion has a p orbital. • The p orbitals on all three oxygens overlap with the p orbital on the central nitrogen.
- 53. Molecular Geometries and Bonding Delocalized Electrons: Resonance This means the electrons are not localized between the nitrogen and one of the oxygens, but rather are delocalized throughout the ion.
- 54. Molecular Geometries and Bonding Resonance The organic molecule benzene has six bonds and a p orbital on each carbon atom.
- 55. Molecular Geometries and Bonding Resonance • In reality the electrons in benzene are not localized, but delocalized. • The even distribution of the electrons in benzene makes the molecule unusually stable.
- 56. Molecular Geometries and Bonding Valence bond theory • Hybridization to explain geometry. • What orbitals are involved in multiple bonds? • Delocalization and resonance.
- 57. Molecular Geometries and Bonding 0 5 10 15 20 25 30 35 30 42 54 66 78 90 102 114 126 138 150 Frequency Bin Histogram
- 58. Molecular Geometries and Bonding Bin Frequency 30 1 36 1 42 2 48 3 54 4 60 4 66 1 72 6 78 7 84 10 90 11 96 10 102 10 108 12 114 22 120 31 126 28 132 31 138 13 144 16 150 3 156 4
- 59. Molecular Geometries and Bonding Molecular Orbital (MO) Theory Valence bond theory works very well for most observed properties of ions and molecules, but there are some concepts better represented by molecular orbital theory.
- 60. Molecular Geometries and Bonding Molecular Orbital (MO) Theory • In MO theory, we invoke the wave nature of electrons. • If waves interact constructively, the resulting orbital is lower in energy: a bonding molecular orbital.
- 61. Molecular Geometries and Bonding Molecular Orbital (MO) Theory If waves interact destructively, the resulting orbital is higher in energy: an antibonding molecular orbital.
- 62. Molecular Geometries and Bonding Molecular Orbital (MO) Theory • Valence bond theory: • atomic orbitals are mixed in each individual atom before bonding. • Molecular orbital theory: • no prebonding mixing. Molecular orbitals are computed after bonding.
- 63. Molecular Geometries and Bonding MO Theory • In H2 the two electrons go into the bonding molecular orbital. • The bond order is one half the difference between the number of bonding and antibonding electrons.
- 64. Molecular Geometries and Bonding MO Theory For hydrogen, with two electrons in the bonding MO and none in the antibonding MO, the bond order is 1 2 (2 - 0) = 1
- 65. Molecular Geometries and Bonding MO Theory • In the case of He2, the bond order would be 1 2 (2 - 2) = 0 • Therefore, He2 does not exist.
- 66. Molecular Geometries and Bonding Rules for making and filling molecular orbitals • 1. The number of MO’s equals the # of Atomic orbitals • 2. The overlap of two atomic orbitals gives two molecular orbitals, 1 bonding, one antibonding • 3. Atomic orbitals combine with other atomic orbitals of similar energy. • 4. Degree of overlap matters. More overlap means bonding orbital goes lower in E, antibonding orbital goes higher in E. • 5. Each MO gets two electrons • 6. Orbitals of the same energy get filled 1 electron at a time until they are filled.
- 67. Molecular Geometries and Bonding MO Theory • For atoms with both s and p orbitals, there are two types of interactions: – The s and the p orbitals that face each other overlap in fashion. – The other two sets of p orbitals overlap in fashion.
- 68. Molecular Geometries and Bonding MO Theory • The resulting MO diagram looks like this. • There are both and bonding molecular orbitals and * and * antibonding molecular orbitals.
- 69. Molecular Geometries and Bonding MO Theory • The earlier p-block elements in the second period have a sizeable interaction between the s and p orbitals. • This flips the order of the and molecular orbitals in these elements.
- 70. Molecular Geometries and Bonding Second-Row MO Diagrams
- 71. Molecular Geometries and Bonding Heterodiatomic molecules CO C CO has a triple bond
- 72. Molecular Geometries and Bonding Heterodiatomic molecules NO is paramagnetic radical
- 73. Molecular Geometries and Bonding Why MO theory? MO theory explains things that Valence Bond theory does not. 1. Magnetism 2. Color of molecules 3. Excited states of molecules.
- 74. Molecular Geometries and Bonding Magnetism We learned that electrons have magnetic quantum number ms “spin”. Electrons have magnetic moment. Electrons cause magnetism. Three kinds of magnetism: 1. Diamagnetism 2. Paramagnetism 3. Ferromagnetism
- 75. Molecular Geometries and Bonding Diamagnetic Paramagnetic Electrons all paired Unpaired electrons
- 76. Molecular Geometries and Bonding Oxygen O2 is Paramagnetic! .. .. O O .. .. Why?
- 77. Molecular Geometries and Bonding MO to the rescue
- 78. Molecular Geometries and Bonding Ferromagnetism Like iron, pulled to a magnet. Long range order of spins in material N S
- 79. Molecular Geometries and Bonding MO theory and color Remember, elements produced color because of electrons Moving from higher to lower energy levels. With MO theory, color of molecules is explained the same way
- 80. Molecular Geometries and Bonding Conjugated polyenes have MO’s that give rise to colors, energy is absorbed, electrons go to higher energy levels.
- 81. Molecular Geometries and Bonding How do we see color? Rhodopsin Isomerization wiggles the rest of the protein, sends nerve signal
- 83. Molecular Geometries and Bonding How does Color Vision work? Each rhodopsin (Rod, Blue, Green, Red) protein exhibits a different wavelength maxima as a result of 11cis-retinal binding as a protonated Schiff base (PSB) via a lysine residue. It is these interactions that lead to color vision and allow us to see the whole visible spectrum. 11-cis-retinal : ~ 380 nm 11-cis-retinal SB : ~ 365 nm 11-cis-retinal PSB : ~ 440 nm PSB in Blue Rhodopsin : ~ 410 nm PSB in Green Rhodopsin : ~ 530 nm PSB in Red Rhodopsin : ~ 560 nm PSB in Rod Rhodopsin : ~ 500 nm 400 nm 700 nm Wavelength (nm) N H
- 84. Molecular Geometries and Bonding You can change the energy of the MO’s of retinal by changing the environment around the molecule.
- 85. Molecular Geometries and Bonding Exam 3 topics • Chapter 7, periodic properties, – Effective nuclear charge – Electronegativity – Electron affinity – Ionization energy – Periodic properties (less emphasized) • Chapter 8, – covalent and ionic bonding – Electronegativity – polar bonds • Chapter 8, Lewis structures – standard lewis structures – formal charge – resonance – less than an octet – more than an octet
- 86. Molecular Geometries and Bonding Exam 3 topics • Chapter 9, geometry and shape of molecules • Chapter 9, polarity/dipole moments of whole molecules • Chapter 9, introduction to covalent bonding, diatomics • Chapter 9, hybridization sp, sp2, sp3, sp3d, sp3d2 • Chapter 9, Valence Bond Theory • Not covered: – Molecular Orbital Theory
- 87. Molecular Geometries and Bonding Chapter 7 • Periodic trends • Effective nuclear charge • Ionization energy, trends • electron affinity, trends.
- 88. Molecular Geometries and Bonding Effective Nuclear Charge The effective nuclear charge, Zeff, is: Zeff = Z − S where Z = atomic number S = screening constant, usually close to the number of inner (n-1) electrons. Na
- 89. Molecular Geometries and Bonding Valence electrons: How many valence electrons in: O O2- Co Co2+ Valence electrons: all electrons in outer most shell all electrons in an unfilled subshell.
- 90. Molecular Geometries and Bonding Trends in First Ionization Energies On a smaller scale, there are two jags in each line. Why?
- 91. Molecular Geometries and Bonding Trends in Electron Affinity There are also two discontinuities in this trend. Why?????
- 92. Molecular Geometries and Bonding Exam 3 topics • Chapter 8, covalent and ionic bonding – What is ionic bonding? What holds the atoms together? – Energetics of ionic bonding – Lattice energy – What effects the size of the lattice energy? • Ion size • Ion charge
- 93. Molecular Geometries and Bonding Exam 3 topics • Chapter 8, electronegativity – What is electronegativity? – What are the trends on the periodic table? • Chapter 8, polar bonds
- 94. Molecular Geometries and Bonding Exam 3 topics • Chapter 8, Lewis structures – standard lewis structures – formal charge – resonance – less than an octet – more than an octet XeF2 XeF6, CO3 -, NO2, ClO4 -, SbF5, SO2, SO3 2-, H2O2
- 95. Molecular Geometries and Bonding Exam 3 topics • Chapter 8, bond enthalpies – use bond enthalpy table to calculate a H of reaction – bonds broken - bonds made = enthapy of reaction.
- 96. Molecular Geometries and Bonding Exam 3 topics • Chapter 9, geometry and shape of molecules, VSEPR. • Chapter 9, polarity/dipole moments of whole molecules • Give the geometry, shape and predict the dipole moment of each: • XeF2, ClO4 -, SF4, BrO2 -
- 97. Molecular Geometries and Bonding Valence bond theory • Hybridization only
- 98. Molecular Geometries and Bonding Exam 3 topics Chapter 9, introduction to covalent bonding, diatomics covalent bonds form when electrons are “shared.” But how, when the electrons are in these atomic orbitals? Do atomic orbitals overlap? Yes.
- 101. Molecular Geometries and Bonding C trigonal planar,trigonal planar, nonpolar .. O O O .. .. : : : - -.. .. C O O O .. .. : : - -.. .. .. : C O O .. : : - .. : O ..: - .. 15.