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OzNome –
Interoperable data as an example of FAIR data principles
LAND AND WATER
Simon Cox, Jonathan Yu
13 September2017
OzNome – “A connected Australia”
CSIRO-led initiative to enhance and connect information
infrastructures across Australia.
https://research.csiro.au/oznome/
FY 2016-17 focused on “OzNome for Land and Water”
An OzNome project seeking to enhance and connect
environmental information infrastructures in Australia,
starting with CSIRO L&W.
https://research.csiro.au/oznome/oznome-land-water/
OzNome for LW updates
+
Tools, products,
services
Methods, approaches,
practices
Infrastructure
2 |
5-star assessment
http://oznome.csiro.au/5star/
OzNome FAIR Interoperable | Cox & Yu3 |
4 |
Findable:
● Citeable via a stable, persistent web identifier
● Described with appropriate metadata
● Indexed in a well known system, e.g. google search, catalog search
Accessible:
● Available on the web? Via standardised web service?
● Curated with a commitment that this data will be available long term
● Indexed in a well known system
Interoperable/Reusable:
● Common formats
● Discoverable, community-endorsed schema or data model
● Unambiguous definitions for all elements (e.g. column definitions, units
of measure) linked to accessible (standard) definitions
● Linked to other data using external identifiers (e.g. URIs)
● Licenced
Trusted:
● Usage information available
● Part of a regular data collection program or series, with clear
maintenance arrangements and update schedule
● Commitment that this data will be available long term
@micheldumontier::#DANSLOD:2017-05-015
37 repositories
@micheldumontier::#DANSLOD:2017-05-016
Scoring the resources
@micheldumontier::#DANSLOD:2017-05-017
Overall evaluation
@micheldumontier::#DANSLOD:2017-05-018
Interoperable?
OzNome FAIR Interoperable | Cox & Yu9 |
Key word Levels
loadable a. bespoke file format
b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc)
c. choice from multiple standard formats
OzNome FAIR Interoperable | Cox & Yu10 |
FAIR - Interoperable
Key word Levels
loadable a. bespoke file format
b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc)
c. choice from multiple standard formats
useable a. implicit schema, not formalized
b. explicit schema, formalized in DDL, XSD, data-package, RDFS/OWL, JSON-Schema or similar
c. community schema, available from a (standard) location
OzNome FAIR Interoperable | Cox & Yu11 |
FAIR - Interoperable
Key word Levels
loadable a. bespoke file format
b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc)
c. choice from multiple standard formats
useable a. implicit schema, not formalized
b. explicit schema, formalized in DDL, XSD, data-package, RDFS/OWL, JSON-Schema or similar
c. community schema, available from a (standard) location
comprehensible a. local field labels
b. field labels linked to text explanations
c. standard labels (e.g. CF Conventions, UCUM units)
d. some field names linked to standard, externally managed vocabularies
e. all field names linked to standard, externally managed vocabularies
OzNome FAIR Interoperable | Cox & Yu12 |
FAIR - Interoperable
Key word Levels
loadable a. bespoke file format
b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc)
c. choice from multiple standard formats
useable a. implicit schema, not formalized
b. explicit schema, formalized in DDL, XSD, data-package, RDFS/OWL, JSON-Schema or similar
c. community schema, available from a (standard) location
comprehensible a. local field labels
b. field labels linked to text explanations
c. standard labels (e.g. CF Conventions, UCUM units)
d. some field names linked to standard, externally managed vocabularies
e. all field names linked to standard, externally managed vocabularies
connected,
linked
a. no links
b. in-bound links from a catalogue or landing page
c. out-bound links to related data
OzNome FAIR Interoperable | Cox & Yu13 |
FAIR - Interoperable
OzNome for LW updates14 |
Geofabric features
AWRA-L historical
1911-2016
AWRA
definitions
Web application
Data
Providers
e.g Govt’
agencies,
research
groups
Data users
Policy
Research
General public
File
download
3rd parties or new
researchers
AWRA-L 2005-
C
?
Modelling
environments
Reports
OzNome maturity estimation
OzNome for LW updates15 |
Findable via Google search
Accessible - publish limited set from
2005
Available as web service
Interoperable/Reusable:
web services, reference definitions as
text. Data descriptions localised.
Trusted: Reliable operationalised
16 |
netCDF metadata example
Presentation title | Presenter name17 |
netCDF metadata example - interoperable
AWRA-L Draft Vocabularies
Referenceable metadata for implicit
observable properties
Online AWRA vocabulary register (draft)
http://registry.it.csiro.au/sandbox/csiro/ozno
me/AWRA-L
Mappings from AWRA data to online draft
AWRA vocabularies
https://confluence.csiro.au/display/OFW/AW
RA-L+Vocabulary+mappings
18 |
AWRA Draft Vocabulary example
http://registry.it.csiro.au/sandbox/csiro/ozno
me/AWRA-L/potential-evapotranspiration
19 |
Potential
Evapotranspiration
Evapotranspiration
Critical
Zone
Water
Millimeter
has unit
of measure
feature
of interest
object
of interest
OzNome maturity estimation
OzNome for LW updates20 |
Findable via Google search
Accessible - publish limited set from
2005
Available as web service
Interoperable/Reusable: some web
services, reference definitions as text
Trusted: Reliable operationalised
updates of 2005 data
Findable/Accessible:
1911-2016 dataset test deployments and aggregates
via connected infrastructure (internal CSIRO)
Enhanced connectivity via web services
Interoperable/Reusable: web services, reference definitions
as Linked Data and externally hosted observable properties
vocabulary definitions
Trusted: Not operational and no trusted repository
Key word Matching FAIR Principle
published Implicitly FAIR
hosted A1 -
curated A2
updated, maintained More than FAIR
licensed R1.1
citeable F1
described R1, F2, F3
findable R1, F2, F3
loadable I1
useable I2, R1.3
comprehensible I2
connected, linked I3
assessable R1.2
trusted More than FAIR
OzNome FAIR Interoperable | Cox & Yu21 |
Oznome data
assessment criteria
https://confluence.csiro.au/display
/OZNOME/Data+ratings
Links and references
• FAIR principles https://www.force11.org/group/fairgroup/fairprinciples
• EC Expert Group on Turning FAIR Data into Reality
https://github.com/FAIR-Data-EG/consultation
• FAIR principles and metrics for evaluation
https://www.slideshare.net/micheldumontier/fair-principles-and-metrics-for-
evaluation
• OzNome data assessment criteria -
https://confluence.csiro.au/display/OZNOME/Data+ratings
• 5-star tool - http://oznome.csiro.au/5star/
OzNome FAIR Interoperable | Cox & Yu22 |
Land and Water
Simon J D Cox
Research Scientist
t +61 2 9545 2365
e simon.cox@csiro.au
w people.csiro.au/Simon-Cox
Land and Water
Jonathan Yu
Research Scientist
t +61 3 9545 2457
e jonathan.yu@csiro.au
w people.csiro.au/Jonathan-Yu
Thank you
LAND AND WATER
Fundamental Questions
• In what ways can we assess the FAIRness of a digital
resource?
• To what degree can we automate this assessment?
• Must we treat each type of digital resource differently?
• Who will use the metrics? The producers, the funders, or
the users?
• Can one resource be more FAIR than another?
• Will/should FAIRness assessments impact funding
decisions?
• Should only one organization define these metrics? Or can
anybody make their own metrics? What happens if a digital
resources scores well against one set of metrics, but not
another?
@micheldumontier::#DANSLOD:2017-05-0124
Key word Levels
published a. No external access
b. External access, non-web protocol (e.g. physical media distribution)
c. Published via the web
hosted a. not on web
b. files on web-server
c. repository with web interface
d. web service - local API
e. RESTful web service - OpenAPI/Swagger
f. standard web API (SPARQL, OGC WMS/WFS/WCS/SOS/WPS, ...)
curated a. once-off dump, no ongoing commitment
b. best effort
c. institutional repository
d. certified repository
updated,
maintained
a. one-time dataset
b. part of data series, occasional/irregular update
c. part of data series with regular updates
OzNome FAIR Interoperable | Cox & Yu25 |
FAIR - Accessible
Implicitly FAIR?
More than FAIR!
Key word Levels
licensed a. no licence
b. licence described in text
c. standard licence (e.g. Creative Commons)
citeable a. Not citeable
b. Local identifier (may change)
c. Web identifier (transient URL or query)
d. Persistent web identifier (PURL, DOI, handle, ARK, etc)
described a. no metadata
b. text description (abstract) and keywords
c. basic metadata (e.g. Dublin Core)
d. specialized metadata (e.g. Darwin Core, ISO 19115, scientific data profile of schema.org)
e. rich metadata using (standard) RDF vocabularies (e.g. DCAT, ADMS, PROV, GeoDCAT, OMV, VoID)
findable a. not indexed
b. indexed in a local, organizational catalogue
c. metadata harvested or pushed into a community (e.g. Research Data Australia, Re3Data) or jurisdictional
catalogue
d. visible in general-purpose indexes (Google, Bing)
e. highly ranked in general-purpose indexes
OzNome FAIR Interoperable | Cox & Yu26 |
FAIR – Findable, Reusable
OzNome FAIR Interoperable | Cox & Yu
Nitrogen
Newtons
North
Noon
Neutral
November
Moles
No!
N
One symbol, many meanings
Unpacking data
Key word Levels
assessable a. No quality or lineage information
b. Lineage statement in text
c. Formal provenance trace (W3C PROV-O or similar)
trusted a. no information about usage
b. usage statistics available.
c. Clearly endorsed by reputable organization or framework
OzNome FAIR Interoperable | Cox & Yu28 |
FAIR – Reusable
More than FAIR?
OzNome for LW updates29 |
Geofabric features
AWRA-L historical
1911-2016
AWRA
definitions
Web application
Data
Providers
e.g Govt’
agencies,
research
groups
Data users
Policy
Research
General public
File
download
3rd parties or new
researchers
AWRA-L 2005-
C
?
Modelling
environments
Reports

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OzNome - Interoperable data as an example of FAIR data principlesfair

  • 1. OzNome – Interoperable data as an example of FAIR data principles LAND AND WATER Simon Cox, Jonathan Yu 13 September2017
  • 2. OzNome – “A connected Australia” CSIRO-led initiative to enhance and connect information infrastructures across Australia. https://research.csiro.au/oznome/ FY 2016-17 focused on “OzNome for Land and Water” An OzNome project seeking to enhance and connect environmental information infrastructures in Australia, starting with CSIRO L&W. https://research.csiro.au/oznome/oznome-land-water/ OzNome for LW updates + Tools, products, services Methods, approaches, practices Infrastructure 2 |
  • 4. 4 | Findable: ● Citeable via a stable, persistent web identifier ● Described with appropriate metadata ● Indexed in a well known system, e.g. google search, catalog search Accessible: ● Available on the web? Via standardised web service? ● Curated with a commitment that this data will be available long term ● Indexed in a well known system Interoperable/Reusable: ● Common formats ● Discoverable, community-endorsed schema or data model ● Unambiguous definitions for all elements (e.g. column definitions, units of measure) linked to accessible (standard) definitions ● Linked to other data using external identifiers (e.g. URIs) ● Licenced Trusted: ● Usage information available ● Part of a regular data collection program or series, with clear maintenance arrangements and update schedule ● Commitment that this data will be available long term
  • 10. Key word Levels loadable a. bespoke file format b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc) c. choice from multiple standard formats OzNome FAIR Interoperable | Cox & Yu10 | FAIR - Interoperable
  • 11. Key word Levels loadable a. bespoke file format b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc) c. choice from multiple standard formats useable a. implicit schema, not formalized b. explicit schema, formalized in DDL, XSD, data-package, RDFS/OWL, JSON-Schema or similar c. community schema, available from a (standard) location OzNome FAIR Interoperable | Cox & Yu11 | FAIR - Interoperable
  • 12. Key word Levels loadable a. bespoke file format b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc) c. choice from multiple standard formats useable a. implicit schema, not formalized b. explicit schema, formalized in DDL, XSD, data-package, RDFS/OWL, JSON-Schema or similar c. community schema, available from a (standard) location comprehensible a. local field labels b. field labels linked to text explanations c. standard labels (e.g. CF Conventions, UCUM units) d. some field names linked to standard, externally managed vocabularies e. all field names linked to standard, externally managed vocabularies OzNome FAIR Interoperable | Cox & Yu12 | FAIR - Interoperable
  • 13. Key word Levels loadable a. bespoke file format b. standard data-format, denoted by a MIME-type (CSV, JSON, XML, netCDF, etc) c. choice from multiple standard formats useable a. implicit schema, not formalized b. explicit schema, formalized in DDL, XSD, data-package, RDFS/OWL, JSON-Schema or similar c. community schema, available from a (standard) location comprehensible a. local field labels b. field labels linked to text explanations c. standard labels (e.g. CF Conventions, UCUM units) d. some field names linked to standard, externally managed vocabularies e. all field names linked to standard, externally managed vocabularies connected, linked a. no links b. in-bound links from a catalogue or landing page c. out-bound links to related data OzNome FAIR Interoperable | Cox & Yu13 | FAIR - Interoperable
  • 14. OzNome for LW updates14 | Geofabric features AWRA-L historical 1911-2016 AWRA definitions Web application Data Providers e.g Govt’ agencies, research groups Data users Policy Research General public File download 3rd parties or new researchers AWRA-L 2005- C ? Modelling environments Reports
  • 15. OzNome maturity estimation OzNome for LW updates15 | Findable via Google search Accessible - publish limited set from 2005 Available as web service Interoperable/Reusable: web services, reference definitions as text. Data descriptions localised. Trusted: Reliable operationalised
  • 17. Presentation title | Presenter name17 | netCDF metadata example - interoperable
  • 18. AWRA-L Draft Vocabularies Referenceable metadata for implicit observable properties Online AWRA vocabulary register (draft) http://registry.it.csiro.au/sandbox/csiro/ozno me/AWRA-L Mappings from AWRA data to online draft AWRA vocabularies https://confluence.csiro.au/display/OFW/AW RA-L+Vocabulary+mappings 18 |
  • 19. AWRA Draft Vocabulary example http://registry.it.csiro.au/sandbox/csiro/ozno me/AWRA-L/potential-evapotranspiration 19 | Potential Evapotranspiration Evapotranspiration Critical Zone Water Millimeter has unit of measure feature of interest object of interest
  • 20. OzNome maturity estimation OzNome for LW updates20 | Findable via Google search Accessible - publish limited set from 2005 Available as web service Interoperable/Reusable: some web services, reference definitions as text Trusted: Reliable operationalised updates of 2005 data Findable/Accessible: 1911-2016 dataset test deployments and aggregates via connected infrastructure (internal CSIRO) Enhanced connectivity via web services Interoperable/Reusable: web services, reference definitions as Linked Data and externally hosted observable properties vocabulary definitions Trusted: Not operational and no trusted repository
  • 21. Key word Matching FAIR Principle published Implicitly FAIR hosted A1 - curated A2 updated, maintained More than FAIR licensed R1.1 citeable F1 described R1, F2, F3 findable R1, F2, F3 loadable I1 useable I2, R1.3 comprehensible I2 connected, linked I3 assessable R1.2 trusted More than FAIR OzNome FAIR Interoperable | Cox & Yu21 | Oznome data assessment criteria https://confluence.csiro.au/display /OZNOME/Data+ratings
  • 22. Links and references • FAIR principles https://www.force11.org/group/fairgroup/fairprinciples • EC Expert Group on Turning FAIR Data into Reality https://github.com/FAIR-Data-EG/consultation • FAIR principles and metrics for evaluation https://www.slideshare.net/micheldumontier/fair-principles-and-metrics-for- evaluation • OzNome data assessment criteria - https://confluence.csiro.au/display/OZNOME/Data+ratings • 5-star tool - http://oznome.csiro.au/5star/ OzNome FAIR Interoperable | Cox & Yu22 |
  • 23. Land and Water Simon J D Cox Research Scientist t +61 2 9545 2365 e simon.cox@csiro.au w people.csiro.au/Simon-Cox Land and Water Jonathan Yu Research Scientist t +61 3 9545 2457 e jonathan.yu@csiro.au w people.csiro.au/Jonathan-Yu Thank you LAND AND WATER
  • 24. Fundamental Questions • In what ways can we assess the FAIRness of a digital resource? • To what degree can we automate this assessment? • Must we treat each type of digital resource differently? • Who will use the metrics? The producers, the funders, or the users? • Can one resource be more FAIR than another? • Will/should FAIRness assessments impact funding decisions? • Should only one organization define these metrics? Or can anybody make their own metrics? What happens if a digital resources scores well against one set of metrics, but not another? @micheldumontier::#DANSLOD:2017-05-0124
  • 25. Key word Levels published a. No external access b. External access, non-web protocol (e.g. physical media distribution) c. Published via the web hosted a. not on web b. files on web-server c. repository with web interface d. web service - local API e. RESTful web service - OpenAPI/Swagger f. standard web API (SPARQL, OGC WMS/WFS/WCS/SOS/WPS, ...) curated a. once-off dump, no ongoing commitment b. best effort c. institutional repository d. certified repository updated, maintained a. one-time dataset b. part of data series, occasional/irregular update c. part of data series with regular updates OzNome FAIR Interoperable | Cox & Yu25 | FAIR - Accessible Implicitly FAIR? More than FAIR!
  • 26. Key word Levels licensed a. no licence b. licence described in text c. standard licence (e.g. Creative Commons) citeable a. Not citeable b. Local identifier (may change) c. Web identifier (transient URL or query) d. Persistent web identifier (PURL, DOI, handle, ARK, etc) described a. no metadata b. text description (abstract) and keywords c. basic metadata (e.g. Dublin Core) d. specialized metadata (e.g. Darwin Core, ISO 19115, scientific data profile of schema.org) e. rich metadata using (standard) RDF vocabularies (e.g. DCAT, ADMS, PROV, GeoDCAT, OMV, VoID) findable a. not indexed b. indexed in a local, organizational catalogue c. metadata harvested or pushed into a community (e.g. Research Data Australia, Re3Data) or jurisdictional catalogue d. visible in general-purpose indexes (Google, Bing) e. highly ranked in general-purpose indexes OzNome FAIR Interoperable | Cox & Yu26 | FAIR – Findable, Reusable
  • 27. OzNome FAIR Interoperable | Cox & Yu Nitrogen Newtons North Noon Neutral November Moles No! N One symbol, many meanings Unpacking data
  • 28. Key word Levels assessable a. No quality or lineage information b. Lineage statement in text c. Formal provenance trace (W3C PROV-O or similar) trusted a. no information about usage b. usage statistics available. c. Clearly endorsed by reputable organization or framework OzNome FAIR Interoperable | Cox & Yu28 | FAIR – Reusable More than FAIR?
  • 29. OzNome for LW updates29 | Geofabric features AWRA-L historical 1911-2016 AWRA definitions Web application Data Providers e.g Govt’ agencies, research groups Data users Policy Research General public File download 3rd parties or new researchers AWRA-L 2005- C ? Modelling environments Reports