This study utilized flow cytometric immunophenotyping to analyze bone marrow samples from 30 newly diagnosed myelodysplastic syndrome (MDS) patients. Abnormalities were frequently observed in the granulocytic, monocytic, and erythroid lineages of MDS patients compared to controls. The most common abnormality in granulocytes was decreased expression of CD10. Low expressions of CD13 were most common in monocytes. The erythroid lineage commonly showed low expression of CD71 and CD235a. Flow cytometry provided supportive evidence of phenotypic abnormalities to aid in the diagnosis of MDS when morphological analysis alone was inconclusive.