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Emerging techniques for soil
  carbon measurements
D. Milori, A. Segnini, W. Da Silva, A. Posadas, V. Mares, R. Quiroz, & L. Martin-Neto
& contributions from L. Claessens & K. Shepherd
OUTLINE

•Emerging techniques for…

•Quick overview of selected emerging techniques

•Examples of field measurements

•Data input for SC modeling

•A “synthetic” scenario

•Summary
Emerging SC measuring
      techniques for...
•Geospatial baseline

•Quantity and quality of SC stocks

•Field-base measurements

•Better input for models

•Assessing tradeoffs
Mostly used SOM techniques in developing countries




                   &/or
Examples of emerging techniques for
                                               SOC measurements




                                   45                                                      0-2.5 cm
                                                                                           2.5-5 cm
                                   40                                                      5-10 cm
                                                                                           10-20 cm
LIF intensity (a.u.) / C (g kg )
-1




                                                                                           20-30 cm
                                   35

                                   30

                                   25

                                   20

                                   15

                                   10

                                   5

                                    460   480   500   520   540   560   580   600   620   640   660
                                                                  λ (nm)
Infrared Spectroscopy for rapid soil
                 characterization




•    Rapid, Low cost                                  Parameter

                                                Total N
                                                                  R2

                                                                        0.9
                                                                              PCs

                                                                                     8


•    Reproducible                               Total C

                                                Organic C
                                                                       0.92

                                                                       0.92
                                                                                     6

                                                                                     6

                                                pH                     0.89         10
•    Predicts many soil functional properties   Ca                     0.95          9
    Source: K. Shepherd (ICRAF)                 K                      0.81         10
LIBS System




  Source: Da Silva et al., 2008
LIF Emission spectrum
                                                        soil
                   3
                                                        calcinate and treated soil    λexcitation = 458 nm
                                                                                      Humification Degree:
                                                                                      HLIF = LIF Area/total carbon
Intensity (a.u.)




                   2




                   1




                   0

                       400   450   500       550        600       650         700

                                          λ (nm)




                                    Milori et al., SSSAJ, 2006.; González-Pérez et al., Geoderma, 2007
Bench and portable LIF correlate well with
                  EPR findings

                                                                        5.0
                                                                                  R=0.93; P<0.0001
                                                                        4.5




                                        LIF bench system: HLIF (a.u.)
                                                                        4.0


                                                                        3.5


                                                                        3.0


                                                                        2.5


                                                                        2.0

                                                                              2       3       4      5          6    7   8   9
                                                                                                           -1       17
                                                                                              EPR [(spins g C) x 10 ]

Electron Paramagnetic Resonance (EPR)
EMBRAPA Lab.
SOM characterization with
          13C-NMR




Nuclear Magnetic Resonance
EMBRAPA Lab
9

                                           0-2.5 cm
                    8                      2.5-5 cm
                                           5-10 cm
                                           10-20 cm
                    7                      20-30 cm




spins (x 10 ) g C
-1
                    6




17
                    5


                    4


                    3


                    2
                        A                             B
                            Bofedales (wetlands)




                                 Source: Segnini et al., 2011
On-going analysis in Kenya




Forest               Tea          Degraded
                                               Native veg.
                                  vegetation
Results from EMBU-Kenya



                                                        CARBON STOCKS# (kg m-2)


                                       Area 1                                 Area 2                          Area 3

sites             Forest      Tea          Coffee +    Coffee       Native             Rotation     Native             Rotation
   depth (cm)                             eucalyptus              vegetation            crops     vegetation            crops


    0-2.5       1.8 ±0.1    0.6 ±0.0        0.6 ±0.0   0.5 ±0.0    0.3 ±0.0            0.7 ±0.1    1.0 ±0.0            0.5 ±0.1

    2.5-5       1.3 ±0.1    0.3 ±0.0        0.6 ±0.1   0.5 ±0.0    0.2 ±0.0            0.7 ±0.1    0.8 ±0.0            0.5 ±0.1

    5-10        2.4 ±0.1    1.2 ±0.1        1.3 ±0.3   1.0 ±00     0.5 ±0.0            1.3 ±0.1    1.4 ±0.0            0.9 ±0.1

    10-20       4.1 ±0.6    2.1 ±0.0        2.1 ±0.1   1.8 ±0.2    0.8 ±0.1            2.1 ±0.4    2.8 ±0.1            2.0 ±0.3

    20-30       3.1 ±0.3    2.1 ±0.0        1.9 ±0.1   1.8 ±0.2    0.8 ±0.2            1.7 ±0.2    1.8 ±0.1            1.3 ±0.1

 Total (0-30)   12.7 ±1.2   6.3 ±0.1        6.4 ±0.5   5.6 ±0.4    2.6 ±0.4            6.5 ±0.9    7.8 ±0.3            5.1 ±0.6
LIF results:Kenya
Humification degree or carbon stability (HLIF) of whole soils obtained
through Laser Induced Fluorescence (LIF) spectroscopy.


                        90
                        80
                        70
                        60
      LIF inde x (a.u.) 50
           (x1000)      40
                        30                                                                                                                                                                               0 - 2.5
                         20
                                                                                                                                                                                                         2.5 - 5
                         10                                                                                                                                                         20 - 30
                          0                                                                                                                                                                              5 - 10
                                                                                                                                                                                 5 - 10
                                                                                                                                                                                           depth (cm )
                              forest (1)




                                                                                                                                                                                                         10 - 20
                                           tea (1)




                                                                                                                                                                              0 - 2.5
                                                     coffee + eucalyptus (1)

                                                                                 coffee (1)

                                                                                              natural vegetation (2)

                                                                                                                       rotation (2)

                                                                                                                                      natural vegetation (3)
                                                                                                                                                                                                         20 - 30




                                                                                                                                                               rotation (3)



                                                                               Land us e




# HLIF can be estimated through the ratio area under fluorescence emission
(excitation range 350 - 480 nm) / total organic carbon content.
Modeling Carbon Dynamics in Soils:


                                                            Weather data used to
                                                            run the model:
                                                            Rainfall: essential
                                                            Air temperature:
                                                            essential
                                                            Temporal resolution of
                                                            weather data:
                                                            Monthly: essential
                                                            Spatial resolution of
                                                            weather data:
                                                            Local scale: essential


Extraction of soil and climate parameters from agro-ecological cells or polygons
for model parameterization
                                                                        Source: FAO
Space-time scaling weather/climate data




                                                                                                           (ppm)




                                                       HUANCANE

                50
                40
         m.m.




                30
                20
                10
                 0
                1-Jan-99   20-Jul-99   5-Feb-00   23-Aug-00 11-Mar-01   27-Sep-01   15-Apr-02   1-Nov-02
                                                           Días
AfSIS

✓60 primary sentinel sites
     9,600 sampling plots
     19,200 “standard” soil samples
     ~ 38,000 soil spectra
     3,000 infiltration tests
     ~ 1,000 Landsat scenes
     ~ 16 TB of remote sensing data to
Sampling-transect to assess carbon contents and stocks in Southern Peru.
                                                                    Source: Segnini et al., 2010
Selected characteristics of the sampling sites.
 sites               Ilo          Moquegua           Torata                Puno           San Juan del
                                                                                              Oro
Agro eco         Arid Coast       Arid low          Arid high           Semi-Arid        humid valley
 zones                             valley            valley            high plateau




 Altitude (m)          135             960              2,200               3,830              1,350

   Cropping        Maize, olive   Maize, potato,       Avocado,           Potato, oat,     Coffee, potato,
    system                        grape, orange,    potato, maize,          alfalfa,        maize, coca,
                                  alfalfa, onion,   alfalfa, cassava      grasslands,          citrus
                                       beans                               peat lands

 Precipitation             5           15                 51               690-834             2133
     (mm)

 T mean ( °C)         19°C            17°C               14°C                8 °C               20°C
  Soil class          loam            loam              loam              clay loam             loam
Carbon stocks in diverse
     Andean soils
LIF results: Andes
Humification degree or carbon stability (HLIF) of whole soils obtained
through Laser Induced Fluorescence (LIF) spectroscopy.


                     40
                     35
                     30
                     25
     LIF index (a.u.) 20                                                                                                                                  0 - 2.5
                     15                                                                                                                                   2.5 - 5
                     10                                                                                                                                   5 - 10
                       5                                                                                                                                  10 - 20
                       0                                                                                                           10 - 20                20 - 30
                           Maize
                                   Olive
                                           Alfalfa I




                                                                                                                                             depth (cm)
                                                       Potato I
                                                                   Grape




                                                                                                                                0 - 2.5
                                                                           Avocado
                                                                                     Alfalfa II
                                                                                                  Coffee
                                                                                                           Forest
                                                                                                                    Potato II


                                                                  Land use




# HLIF can be estimated through the ratio area under fluorescence emission
(excitation range 350 - 480 nm) / total organic carbon content.
Changes in potential potato (improved and native) in Peru: 2000-2050
As temperature and presence of pest increase in the
     Andes Potatoes are planted in higher grounds


1975:
(4000-4150msnm)
2005:
(4150-4300msnm)




                  S. De Haan & H. Juarez, CIP (2008)
Peatlands and other
land uses in the
Andean high
plateau
Potential loss of soil carbon stocks due to cropping
    peatlands and grasslands in Peru & Bolivia

                                                             Peatlands to potato

                                                 350
                                                 300




                              Gigagrams (10x9)
                                                 250
                                                 200
                                                 150
                                                 100
                                                 50
                                                  0
                                                           2000        Scenarios           2050



                                                             Bolivia                Peru



                                                             Grasslands to potato

                                                 12000
                                                 10000


                              Gigagrams (10x9)
                                                 8000
                                                 6000
                                                 4000
                                                 2000
                                                       0
                                                            2000       Scenarios           2050



                                                             Bolivia                Peru
Summary
•Emerging SC measuring techniques / tools & MRV

•Further field testing under different agroecological conditions &
creation of spectral libraries needed (C-contents & stability)

•Better input for SC modeling

•Better assessment of tradeoffs

•Synergy with complementary tools e.g. remote sensing

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Quiroz - techniques for measuring soil C

  • 1. Emerging techniques for soil carbon measurements D. Milori, A. Segnini, W. Da Silva, A. Posadas, V. Mares, R. Quiroz, & L. Martin-Neto & contributions from L. Claessens & K. Shepherd
  • 2. OUTLINE •Emerging techniques for… •Quick overview of selected emerging techniques •Examples of field measurements •Data input for SC modeling •A “synthetic” scenario •Summary
  • 3. Emerging SC measuring techniques for... •Geospatial baseline •Quantity and quality of SC stocks •Field-base measurements •Better input for models •Assessing tradeoffs
  • 4. Mostly used SOM techniques in developing countries &/or
  • 5. Examples of emerging techniques for SOC measurements 45 0-2.5 cm 2.5-5 cm 40 5-10 cm 10-20 cm LIF intensity (a.u.) / C (g kg ) -1 20-30 cm 35 30 25 20 15 10 5 460 480 500 520 540 560 580 600 620 640 660 λ (nm)
  • 6. Infrared Spectroscopy for rapid soil characterization • Rapid, Low cost Parameter Total N R2 0.9 PCs 8 • Reproducible Total C Organic C 0.92 0.92 6 6 pH 0.89 10 • Predicts many soil functional properties Ca 0.95 9 Source: K. Shepherd (ICRAF) K 0.81 10
  • 7. LIBS System Source: Da Silva et al., 2008
  • 8. LIF Emission spectrum soil 3 calcinate and treated soil λexcitation = 458 nm Humification Degree: HLIF = LIF Area/total carbon Intensity (a.u.) 2 1 0 400 450 500 550 600 650 700 λ (nm) Milori et al., SSSAJ, 2006.; González-Pérez et al., Geoderma, 2007
  • 9. Bench and portable LIF correlate well with EPR findings 5.0 R=0.93; P<0.0001 4.5 LIF bench system: HLIF (a.u.) 4.0 3.5 3.0 2.5 2.0 2 3 4 5 6 7 8 9 -1 17 EPR [(spins g C) x 10 ] Electron Paramagnetic Resonance (EPR) EMBRAPA Lab.
  • 10. SOM characterization with 13C-NMR Nuclear Magnetic Resonance EMBRAPA Lab
  • 11. 9 0-2.5 cm 8 2.5-5 cm 5-10 cm 10-20 cm 7 20-30 cm spins (x 10 ) g C -1 6 17 5 4 3 2 A B Bofedales (wetlands) Source: Segnini et al., 2011
  • 12. On-going analysis in Kenya Forest Tea Degraded Native veg. vegetation
  • 13. Results from EMBU-Kenya CARBON STOCKS# (kg m-2) Area 1 Area 2 Area 3 sites Forest Tea Coffee + Coffee Native Rotation Native Rotation depth (cm) eucalyptus vegetation crops vegetation crops 0-2.5 1.8 ±0.1 0.6 ±0.0 0.6 ±0.0 0.5 ±0.0 0.3 ±0.0 0.7 ±0.1 1.0 ±0.0 0.5 ±0.1 2.5-5 1.3 ±0.1 0.3 ±0.0 0.6 ±0.1 0.5 ±0.0 0.2 ±0.0 0.7 ±0.1 0.8 ±0.0 0.5 ±0.1 5-10 2.4 ±0.1 1.2 ±0.1 1.3 ±0.3 1.0 ±00 0.5 ±0.0 1.3 ±0.1 1.4 ±0.0 0.9 ±0.1 10-20 4.1 ±0.6 2.1 ±0.0 2.1 ±0.1 1.8 ±0.2 0.8 ±0.1 2.1 ±0.4 2.8 ±0.1 2.0 ±0.3 20-30 3.1 ±0.3 2.1 ±0.0 1.9 ±0.1 1.8 ±0.2 0.8 ±0.2 1.7 ±0.2 1.8 ±0.1 1.3 ±0.1 Total (0-30) 12.7 ±1.2 6.3 ±0.1 6.4 ±0.5 5.6 ±0.4 2.6 ±0.4 6.5 ±0.9 7.8 ±0.3 5.1 ±0.6
  • 14. LIF results:Kenya Humification degree or carbon stability (HLIF) of whole soils obtained through Laser Induced Fluorescence (LIF) spectroscopy. 90 80 70 60 LIF inde x (a.u.) 50 (x1000) 40 30 0 - 2.5 20 2.5 - 5 10 20 - 30 0 5 - 10 5 - 10 depth (cm ) forest (1) 10 - 20 tea (1) 0 - 2.5 coffee + eucalyptus (1) coffee (1) natural vegetation (2) rotation (2) natural vegetation (3) 20 - 30 rotation (3) Land us e # HLIF can be estimated through the ratio area under fluorescence emission (excitation range 350 - 480 nm) / total organic carbon content.
  • 15. Modeling Carbon Dynamics in Soils: Weather data used to run the model: Rainfall: essential Air temperature: essential Temporal resolution of weather data: Monthly: essential Spatial resolution of weather data: Local scale: essential Extraction of soil and climate parameters from agro-ecological cells or polygons for model parameterization Source: FAO
  • 16. Space-time scaling weather/climate data (ppm) HUANCANE 50 40 m.m. 30 20 10 0 1-Jan-99 20-Jul-99 5-Feb-00 23-Aug-00 11-Mar-01 27-Sep-01 15-Apr-02 1-Nov-02 Días
  • 17. AfSIS ✓60 primary sentinel sites 9,600 sampling plots 19,200 “standard” soil samples ~ 38,000 soil spectra 3,000 infiltration tests ~ 1,000 Landsat scenes ~ 16 TB of remote sensing data to
  • 18. Sampling-transect to assess carbon contents and stocks in Southern Peru. Source: Segnini et al., 2010
  • 19. Selected characteristics of the sampling sites. sites Ilo Moquegua Torata Puno San Juan del Oro Agro eco Arid Coast Arid low Arid high Semi-Arid humid valley zones valley valley high plateau Altitude (m) 135 960 2,200 3,830 1,350 Cropping Maize, olive Maize, potato, Avocado, Potato, oat, Coffee, potato, system grape, orange, potato, maize, alfalfa, maize, coca, alfalfa, onion, alfalfa, cassava grasslands, citrus beans peat lands Precipitation 5 15 51 690-834 2133 (mm) T mean ( °C) 19°C 17°C 14°C 8 °C 20°C Soil class loam loam loam clay loam loam
  • 20. Carbon stocks in diverse Andean soils
  • 21. LIF results: Andes Humification degree or carbon stability (HLIF) of whole soils obtained through Laser Induced Fluorescence (LIF) spectroscopy. 40 35 30 25 LIF index (a.u.) 20 0 - 2.5 15 2.5 - 5 10 5 - 10 5 10 - 20 0 10 - 20 20 - 30 Maize Olive Alfalfa I depth (cm) Potato I Grape 0 - 2.5 Avocado Alfalfa II Coffee Forest Potato II Land use # HLIF can be estimated through the ratio area under fluorescence emission (excitation range 350 - 480 nm) / total organic carbon content.
  • 22. Changes in potential potato (improved and native) in Peru: 2000-2050
  • 23. As temperature and presence of pest increase in the Andes Potatoes are planted in higher grounds 1975: (4000-4150msnm) 2005: (4150-4300msnm) S. De Haan & H. Juarez, CIP (2008)
  • 24. Peatlands and other land uses in the Andean high plateau
  • 25. Potential loss of soil carbon stocks due to cropping peatlands and grasslands in Peru & Bolivia Peatlands to potato 350 300 Gigagrams (10x9) 250 200 150 100 50 0 2000 Scenarios 2050 Bolivia Peru Grasslands to potato 12000 10000 Gigagrams (10x9) 8000 6000 4000 2000 0 2000 Scenarios 2050 Bolivia Peru
  • 26. Summary •Emerging SC measuring techniques / tools & MRV •Further field testing under different agroecological conditions & creation of spectral libraries needed (C-contents & stability) •Better input for SC modeling •Better assessment of tradeoffs •Synergy with complementary tools e.g. remote sensing