UNit4d.pdf

5
• key
• independent attribute
• used as unique index to look up items
• simple tables: 1 key
• multidimensional tables: multiple keys
• value
• dependent attribute, value of cell
• classify arrangements by key count
• 0, 1, 2, many...

6
• express values
• quantitative attributes
• no keys, only values
• data
• 2 quant attribs
• mark: points
• channels
• horiz + vert position
• tasks
• find trends, outliers, distribution, correlation,
clusters
• scalability
• hundreds of items
6
[A layered grammar of graphics. Wickham. Journ. Computational and Graphical Statistics 19:1 (2010), 3–28.]

7
• regions: contiguous bounded areas
distinct from each other
• using space to separate (proximity)
• following expressiveness principle
for categorical attributes
• use ordered attribute to order and
align regions

8
• one key, one value
• data
• 1 categ attrib, 1 quant attrib
• mark: lines
• channels
• length to express quant value
• spatial regions: one per mark
• separated horizontally, aligned vertically
• ordered by quant attrib
• by label (alphabetical), by length attrib (data-driven)
• task
• compare, lookup values
• scalability
• dozens to hundreds of levels for key attrib
8

9
• one more key
• data
• 2 categ attrib, 1 quant attrib
• mark: vertical stack of line marks
• glyph: composite object, internal structure from multiple marks
• channels
• length and color hue
• spatial regions: one per glyph
• aligned: full glyph, lowest bar component
• unaligned: other bar components
• task
• part-to-whole relationship
• scalability
• several to one dozen levels for stacked attrib
9
[Using Visualization to Understand the
Behavior of Computer Systems. Bosch. Ph.D.
thesis, Stanford Computer Science, 2001.]

10
• generalized stacked graph
• emphasizing horizontal continuity
• vs vertical items
• data
• 1 categ key attrib (artist)
• 1 ordered key attrib (time)
• 1 quant value attrib (counts)
• derived data
• geometry: layers, where height encodes counts
• 1 quant attrib (layer ordering)
• scalability
• hundreds of time keys
• dozens to hundreds of artist keys
• more than stacked bars, since most layers don’t extend across whole chart
10
[Stacked Graphs Geometry & Aesthetics. Byron and
Wattenberg. IEEE Trans. Visualization and Computer Graphics
(Proc. InfoVis 2008) 14(6): 1245–1252, (2008).]

11
• one key, one value
• data
• 2 quant attribs
• mark: points
• line connection marks between them
• channels
• aligned lengths to express quant value
• separated and ordered by key attrib into horizontal regions
• task
• find trend
• connection marks emphasize ordering of items along key axis by explicitly
showing relationship between one item and the next
11

12
• depends on type of key attrib
• bar charts if categorical
• line charts if ordered
• do not use line charts for categorical key attribs
• violates expressiveness principle
• implication of trend so strong that it
overrides semantics!
• “The more male a person is, the taller
he/she is”
after [Bars and Lines: A Study of Graphic
Communication. Zacks and Tversky. Memory and
Cognition 27:6 (1999), 1073–1079.]

13
• two keys, one value
• data
• 2 categ attribs (gene, experimental condition)
• 1 quant attrib (expression levels)
• marks: area
• separate and align in 2D matrix
• indexed by 2 categorical attributes
• channels
• color by quant attrib
• (ordered diverging colormap)
• task
• find clusters, outliers
• scalability
• 1M items, 100s of categ levels, ~10 quant attrib levels
13

14
• in addition
• derived data
• 2 cluster hierarchies
• dendrogram
• parent-child relationships in tree with connection line marks
• leaves aligned so interior branch heights easy to compare
• heatmap
• marks (re-)ordered by cluster hierarchy traversal
14

16
• scatterplot matrix (SPLOM)
• rectilinear axes, point mark
• all possible pairs of axes
• scalability
• one dozen attribs
• dozens to hundreds of items
• parallel coordinates
• parallel axes, jagged line representing item
• rectilinear axes, item as point
• axis ordering is major challenge
• scalability
• dozens of attribs
• hundreds of items
after [Visualization Course Figures. McGuffin, 2014.
http://www.michaelmcguffin.com/courses/vis/]

17
• scatterplot matrix
• positive correlation
• diagonal low-to-high
• negative correlation
• diagonal high-to-low
• uncorrelated
• parallel coordinates
• positive correlation
• parallel line segments
• negative correlation
• all segments cross at halfway point
• uncorrelated
• scattered crossings
17
[Hyperdimensional Data Analysis Using Parallel
Coordinates. Wegman. Journ. American Statistical
Association 85:411 (1990), 664–675.]
[A layered grammar of graphics. Wickham. Journ. Computational and Graphical Statistics 19:1 (2010), 3–28.]

18
• radial bar chart
• radial axes meet at central ring, line mark
• star plot
• radial axes, meet at central point, line mark
• bar chart
• rectilinear axes, aligned vertically
• accuracy
• length unaligned with radial
• less accurate than aligned with rectilinear
[Vismon: Facilitating Risk Assessment and Decision Making In Fisheries Management. Booshehrian, Möller, Peterman, and Munzner. Technical Report TR 2011-04, Simon Fraser
University, School of Computing Science, 2011.]

19
• pie chart
• area marks with angle channel
• accuracy: angle/area much less accurate than
line length
• polar area chart
• area marks with length channel
• more direct analog to bar charts
• data
• 1 categ key attrib, 1 quant value attrib
• task
• part-to-whole judgements
[A layered grammar of graphics. Wickham. Journ. Computational and Graphical Statistics 19:1 (2010),
3–28.]

• task
• part-to-whole judgements
• normalized stacked bar chart
• stacked bar chart, normalized to full vert height
• single stacked bar equivalent to full pie
• high information density: requires narrow rectangle
• pie chart
• information density: requires large circle
20
http://bl.ocks.org/mbostock/3887235,http://bl.ocks.org/mbostock/3886208,
http://bl.ocks.org/mbostock/3886394.

21
• rectilinear good for linear vs nonlinear trends
• radial good for cyclic patterns
[Glyph-maps for Visually Exploring Temporal Patterns in Climate Data and Models.
Wickham, Hofmann, Wickham, and Cook. Environmetrics 23:5 (2012), 382–393.]

22
• rectilinear: scalability wrt #axes
• 2 axes best
• 3 problematic
• more in afternoon
• 4+ impossible
• parallel: unfamiliarity, training
time
• radial: perceptual limits
• angles lower precision than
lengths
• asymmetry between angle
and length
• can be exploited!
[Uncovering Strengths and Weaknesses of Radial
Visualizations - an Empirical Approach. Diehl, Beck
and Burch. IEEE TVCG (Proc. InfoVis) 16(6):935--
942, 2010.]

25
• use given spatial data
• when central task is understanding spatial relationships
• data
• geographic geometry
• table with 1 quant attribute per region
• encoding
• use given geometry for area mark boundaries
• sequential segmented colormap
http://bl.ocks.org/mbostock/4060606

26
• data
• geographic geometry
• scalar spatial field
• 1 quant attribute per grid cell
• derived data
• isoline geometry
• isocontours computed for
specific levels of scalar values
Land Information New Zealand Data Service

27
• data
• scalar spatial field
• 1 quant attribute per grid cell
• derived data
• isosurface geometry
• isocontours computed for
specific levels of scalar values
• task
• spatial relationships
[Interactive Volume Rendering Techniques. Kniss. Master’s
thesis, University of Utah Computer Science, 2002.]

28
• direct volume rendering
• transfer function maps scalar values to
color, opacity
• no derived geometry
• multidimensional transfer functions
• derived data in joint 2D histogram
• horiz axis: data values of scalar func
• vert axis: gradient magnitude
(direction of fastest change)
• [more on cutting planes and
histograms later]
[Multidimensional Transfer Functions for Volume Rendering. Kniss, Kindlmann, and Hansen. In The Visualization Handbook, edited by Charles Hansen and
Christopher Johnson, pp. 189–210. Elsevier, 2005.]

29
• data
• many attribs per cell
• idiom families
• flow glyphs
• purely local
• geometric flow
• derived data from tracing particle trajectories
• sparse set of seed points
• texture flow
• derived data, dense seeds
• feature flow
• global computation to detect features
• encoded with one of methods above
29
[Comparing 2D vector field visualization methods: A
user study. Laidlaw et al. IEEE Trans. Visualization
and Computer Graphics (TVCG) 11:1 (2005), 59–70.]
[Topology tracking for the visualization of time-
dependent two-dimensional flows. Tricoche, Wischgoll,
Scheuermann, and Hagen. Computers & Graphics 26:2
(2002), 249–257.]

30
•empirical study tasks
• finding critical points,
identifying their types
• identifying what type of
critical point is at a specific
location
• predicting where a particle
starting at a specified point
will end up (advection)
30
[Comparing 2D vector field visualization methods: A user study. Laidlaw et al. IEEE
Trans. Visualization and Computer Graphics (TVCG) 11:1 (2005), 59–70.]
[Topology tracking for the visualization of time-dependent two-dimensional flows.
Tricoche, Wischgoll, Scheuermann, and Hagen. Computers & Graphics 26:2 (2002),
249–257.]

31
• data
• 3D vector field
• derived data (from field)
• streamlines: trajectory particle will follow
• derived data (per streamline)
• curvature, torsion, tortuosity
• signature: complex weighted combination
• compute cluster hierarchy across all
signatures
• encode: color and opacity by cluster
• tasks
• find features, query shape
• scalability
• millions of samples, hundreds of streamlines
31
[Similarity Measures for Enhancing Interactive Streamline Seeding.
McLoughlin,. Jones, Laramee, Malki, Masters, and. Hansen. IEEE Trans.
Visualization and Computer Graphics 19:8 (2013), 1342–1353.]

34
•visual encoding
• link connection marks, node point marks
•considerations
• spatial position: no meaning directly encoded
• left free to minimize crossings
• proximity semantics?
• sometimes meaningful
• sometimes arbitrary, artifact of layout algorithm
• tension with length
• long edges more visually salient than short
•tasks
• explore topology; locate paths, clusters
•scalability
• node/edge density E < 4N
http://mbostock.github.com/d3/ex/force.html

35
• data
• original: network
• derived: cluster hierarchy atop it
• considerations
• better algorithm for same encoding
technique
• same: fundamental use of space
• hierarchy used for algorithm
speed/quality but not shown explicitly
• (more on algorithm vs encoding in
afternoon)
• scalability
• nodes, edges: 1K-10K
• hairball problem eventually hits
[Efficient and high quality force-
directed graph drawing. Hu. The
Mathematica Journal 10:37–71,
2005.]
http://www.research.att.com/yifanhu/GALLERY/GRAPHS/index1.html

36
• data: network
• transform into same data/encoding as heatmap
• derived data: table from network
• 1 quant attrib
• weighted edge between nodes
• 2 categ attribs: node list x 2
• visual encoding
• cell shows presence/absence of edge
• scalability
• 1K nodes, 1M edges
36
[NodeTrix: a Hybrid Visualization of Social Networks. Henry, Fekete,
and McGuffin. IEEE TVCG (Proc. InfoVis) 13(6):1302-1309, 2007.]
[Points of view: Networks. Gehlenborg and Wong. Nature Methods 9:115.]

37
• adjacency matrix strengths
• predictability, scalability, supports reordering
• some topology tasks trainable
• node-link diagram strengths
• topology understanding, path tracing
• intuitive, no training needed
• empirical study
• node-link best for small networks
• matrix best for large networks
• if tasks don’t involve topological structure!
37
[On the readability of graphs using node-link and matrix-based representations: a controlled
experiment and statistical analysis. Ghoniem, Fekete, and Castagliola. Information Visualization 4:2
(2005), 114–135.]
http://www.michaelmcguffin.com/courses/vis/patternsIn
AdjacencyMatrix.png

38
• data
• tree
• encoding
• link connection marks
• point node marks
• radial axis orientation
• angular proximity: siblings
• distance from center: depth in tree
• tasks
• understanding topology, following
paths
• scalability
• 1K - 10K nodes
38
http://mbostock.github.com/d3/ex/tree.html

39
• data
• tree
• 1 quant attrib at leaf nodes
• encoding
• area containment marks for
hierarchical structure
• rectilinear orientation
• size encodes quant attrib
• tasks
• query attribute at leaf nodes
• scalability
• 1M leaf nodes
39
http://tulip.labri.fr/Documentation/3_7/userHandbook/ht
ml/ch06.html

40
• marks as links (vs. nodes)
• common case in network drawing
• 1D case: connection
• ex: all node-link diagrams
• emphasizes topology, path tracing
• networks and trees
• 2D case: containment
• ex: all treemap variants
• emphasizes attribute values at
leaves (size coding)
• only trees
[Elastic Hierarchies: Combining Treemaps and Node-
Link Diagrams. Dong, McGuffin, and Chignell. Proc.
InfoVis 2005, p. 57-64.]

41
• data shown
• link relationships
• tree depth
• sibling order
• design choices
• connection vs containment link marks
• rectilinear vs radial layout
• spatial position channels
• considerations
• redundant? arbitrary?
• information density?
• avoid wasting space [Quantifying the Space-Efficiency of 2D Graphical
Representations of Trees. McGuffin and Robert.
Information Visualization 9:2 (2010), 115–140.]

42
• data: compound graphs
• network
• cluster hierarchy atop it
• derived or interactively chosen
• visual encoding
• connection marks for network links
• containment marks for hierarchy
• point marks for nodes
• dynamic interaction
• select individual metanodes in hierarchy to
expand/contract [GrouseFlocks: Steerable Exploration of
Graph Hierarchy Space. Archambault,
Munzner, and Auber. IEEE TVCG 14(4):900
913, 2008.]

44
• 3 channels
• what/where for categorical
• hue
• how-much for ordered
• luminance
• saturation
• other common color spaces
• RGB: poor choice for visual encoding
• HSL: better, but beware
• lightness ≠ luminance
• transparency
• useful for creating visual layers
• but cannot combine with luminance
or saturation
44

45
•categorical limits: noncontiguous
• 6-12 bins hue/color
• far fewer if colorblind
• 3-4 bins luminance, saturation
• size heavily affects salience
• use high saturation for small regions, low saturation for large after [Color Use Guidelines for Mapping and Visualization. Brewer,
1994.
http://www.personal.psu.edu/faculty/c/a/cab38/ColorSch/Schemes.ht
ml]

46
• noncontiguous small regions of color: only 6-12 bins
[Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. Sinha and Meller. BMC Bioinformatics,
8:82, 2007.]

47
•problems
• perceptually unordered
• perceptually nonlinear
•benefits
• fine-grained structure visible and
nameable
•alternatives
• fewer hues for large-scale structure
• multiple hues with monotonically
increasing luminance for fine-grained
• segmented rainbows good for
categorical, ok for binned
[Transfer Functions in Direct Volume Rendering: Design, Interface, Interaction. Kindlmann. SIGGRAPH 2002 Course
Notes]
[A Rule-based Tool for Assisting Colormap Selection. Bergman,. Rogowitz, and. Treinish. Proc
IEEE Visualization (Vis), pp. 118–125, 1995.]
[Why Should Engineers Be Worried About Color? Treinish and Rogowitz 1998.
http://www.research.ibm.com/people/l/lloydt/color/color.HTM]

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• size
• length accurate, 2D area ok, 3D volume poor
• angle
• nonlinear accuracy
• horizontal, vertical, exact diagonal
• shape
• complex combination of lower-level primitives
• many bins
• motion
• highly separable against static
• binary: great for highlighting
• use with care to avoid irritation

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