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NANOBIOSENSORS
biosensors on the nano-scale size
BIOSENSORS
• A device incorporating a biological sensing
element either intimately connected to or
integrated within a transducer.
• Recognition based on affinity between
complementary structures like:
enzyme-substrate, antibody-antigen , receptorhormone complex.

• Selectivity and specificity depend on
biological recognition systems connected to
a suitable transducer.
10 nanosensors
10 nanosensors
10 nanosensors
Biosensor Development
• 1916 First report on the immobilization of proteins: adsorption of
invertase on activated charcoal.
• 1956 Invention of the first oxygen electrode [Leland Clark]
• 1962 First description of a biosensor: an amperometric enzyme electrode
for glucose. [Leland Clark, New York Academy of Sciences Symposium]
• 1969 First potentiometric biosensor: urease immobilized on an ammonia
electrode to detect urea. [Guilbault and Montalvo]
• 1970 Invention of the Ion-Selective Field-Effect Transistor (ISFET).
• 1972/5 First commercial biosensor: Yellow Springs Instruments glucose
biosensor.
• 1976 First bedside artificial pancreas [Clemens et al.]
• 1980 First fiber optic pH sensor for in vivo blood gases.
• 1982 First fiber optic-based biosensor for glucose
• 1983 First surface plasmon resonance (SPR) immunosensor.
• 1987 Launch of the blood glucose biosensor[ MediSense]
Theory
Biosensors
Bio-receptor
Molecular

Transducer
Optical

DNA

Bio-luminescence

Protein

Photoluminescence
Electrical

Glucose

Electronic

Etc…..
Cell

Bio-mimetic

Electrochemical
Mechanical
Resonance
Bending
Bio-receptor/ analyte complexes
• Antibody/antigen interactions,
• Nucleic acid interactions
• Enzymatic interactions
• Cellular interactions
• Interactions using bio-mimetic materials
(e.g. synthetic bio-receptors).
Signal transduction methods
1. Optical measurements - luminescence,
absorption, surface plasmon resonance
2. Electrochemical - potentiometric,
amperometric, etc.
3. Electrical – transistors, nano-wires, conductive
gels etc.
4. Mass-sensitive measurements- surface
acoustic wave, microcantilever, microbalance,
etc.).
Electrical sensing
Nano-bio interfacing  how to translate the
biological information onto electrical signal ?
• Electrochemical
– Redox reactions

• Electrical
– FET
(Nano wires; Conducting Electro-active Polymers)
Electrical sensors
FET based methods – FET – Field Effect Transistors
 ISFET – Ion Sensitive FET
 CHEMFET – Chemically Sensitive FET
 SAM-FET – Self Assembly Monolayer Based FET
Il principio di funzionamento del transistor a effetto di campo si fonda sulla
possibilità di controllare la conduttività elettrica del dispositivo, e quindi la
corrente elettrica che lo attraversa, mediante la formazione di un campo
elettrico al suo interno.

K

Corrente elettrica
Amplificazione di un segnale in
entrata.
Funzionamento da interruttore
(switcher).
Nanowires Biosensors
Field Effect
Nanobiosensors (FET)

• Functionalize the nano-wires
• Binding to bio-molecules will affect the nano-wires conductivity.
Nanowire Field Effect Nanobiosensors (FET)
Sensing Element
Semiconductor channel
transistor.

(nanowire) of the

• The semiconductor channel is fabricated using nanomaterials such
carbon nanotubes, metal oxide nanowires or Si nanowires.
• Very high surface to volume radio and very large portion of the atoms are
located on the surface. Extremely sensitive to environment
NANOWIRE
NANOTUBE
10 nanosensors
10 nanosensors
10 nanosensors
NW grow across gap between electrodes
Growing NW connect to the second electrode
Form trench in Si and
Deposit catalyst

NW grows
perpendicular

NW connects to opposite
sidewall
10 nanosensors
10 nanosensors
Schematic shows two
nanowire devices, 1 and 2,
where the nanowires are
modified with different
antibody receptors.
Specific binding of a single
virus to the receptors on
nanowire 2 produces a
conductance change
(Right) characteristic of the
surface charge of the virus
only in nanowire 2. When
the virus unbinds from the
surface the conductance
returns to the baseline
value.
10 nanosensors
10 nanosensors
10 nanosensors
10 nanosensors
10 nanosensors
10 nanosensors
10 nanosensors
10 nanosensors
Self-Assembled Electrical Biodetector
Based on Reduced Graphene Oxide

Due to the presence of polar groups such as hydroxyl, carboxyl, and epoxy groups, GO is very
hydrophilic in comparison to graphene. For the purpose of device applications, the drawback
when using GO is that it is an insulating material. This can be overcome by the use of a
reduction procedure, which improves its conductivity, yielding reduced graphene oxide
(RGO).

Published in: Tetiana Kurkina; Subramanian Sundaram; Ravi Shankar Sundaram; Francesca Re; Massimo Masserini; Klaus Kern; Kannan Balasubramanian; ACS
Nano 2012, 6, 5514-5520.
Scheme of the chemical anchoring protocol: (a) electrochemical functionalization of Pt electrodes with tyramine leading to (b) a coating of
polytyramine on the electrode surface; (c) incubation of the chip in a GO solution results in the coupling of GO flakes to the polytyramine
layer; (d) annealing in argon at 350 °C leads to the removal of the polytyramine layer and the reduction of most of the oxygen-containing
groups. WE = working electrode, CE = counter electrode, RE = reference electrode.
The samples are annealed in argon at 350 °C for 60 min. This serves two purposes,
namely, the removal of the pTy film and simultaneously the reduction of oxygencontaining groups to a large extent
Sensing of amyloid beta peptide using RGO immunosensor. (a) Schematic of RGO-FET
immunosensor; RE = reference electrode. (b) Field-effect characteristics of the RGO
immunosensor before and after functionalization and after the exposure of antibodyfunctionalized device to 1 fM Aβ. (c) Control device showing the field-effect characteristics
of another RGO device without the antibody.
RGO was covered with Staphylococcus aureus protein A (SpA) through carbodiimide coupling.
SpA ensures a proper orientation of the subsequently immobilized antibodies since it has high
specificity to the Fc fragments. In a second step, SpA-RGO was modified with anti-Aβ-antibodies
by incubating the samples in a 50 mM antibody solution.
Scheme of the chemical anchoring protocol: (a) electrochemical functionalization of Pt electrodes with tyramine leading to (b) a coating of
polytyramine on the electrode surface; (c) incubation of the chip in a GO solution results in the coupling of GO flakes to the polytyramine
layer; (d) annealing in argon at 350 °C leads to the removal of the polytyramine layer and the reduction of most of the oxygen-containing
groups. WE = working electrode, CE = counter electrode, RE = reference electrode.
Wafer-scale RGO devices with high yield. (a) Photograph of a 4 in. glass wafer with photolithographically patterned electrodes. The electrodes
in the red dashed region are connected to each other through the large pads in the upper left and lower bottom. These large pads are used to
deposit a polytyramine layer on all the electrodes in a single step. There are 15 chips in the red dashed region, each chip containing six
electrode gaps with an electrode layout as shown in Figure 3a. (b) Histogram of resistances of 77 out of the 90 electrode gaps at the end of the
chemical anchoring protocol. Thirteen devices showed very high resistances (more than 3 MOhm).
Other optical methods
• Surface Plasmon Resonance (SPR)
Surface Plasmon Resonance (SPR)
Mechanical sensing
Cantilever-based sensing
10 nanosensors
Bio-molecule sensing
Detection of biomolecules by
simple mechanical transduction:
target molecule

receptor molecule
gold
SiNx cantilever

target binding
deflection d

- cantilever surface is covered
by receptor layer
(functionalization)
- biomolecular interaction
between receptor and
target molecules
(molecular recognition)
- interaction between adsorbed
molecules induces surface stress
change
bending of cantilever
10 nanosensors
Quantitative assay:
resonance frequency mass-sensitive detector
A

f1

1
2

k
m eff

f1
f1

A

f2

1
2

m

k
m eff

f

m

f2

f2

A mass sensitive resonator transforms an additional mass loading
into a resonance frequency shift
mass sensor
B. Kim et al, Institut für Angewandte Physik - Universität Tübingen

f
Magnetic sensing
• magnetic fields to sense magnetic nanoparticles that have been attached to biological
molecules.
Stabilization of Magnetic Particles with various Streptavidin Conc.
Magnetic nano particle

Ligand-functionalized

Analyte

10 min reaction
None

1 ng/ml

100 ng/ml

100 g/ml

Cleaning
5 min deposition

Anti-analyte Antibody
T. Osaka, 2006
Magnetic sensing

Sensing plate
Magnetic head

Activated pixel

Idle pixel

Magnetic field sensor

Magnetic sensing
Magnetic-optic sensing

Optics
Light
source

Polarization
Detector

Sensing plate

Activated pixel

Idle pixel

Polarizer
Applications of Nanobiosensors
Biological Applications
• DNA Sensors; Genetic monitoring, disease
• Immunosensors; HIV, Hepatitis,other viral diseas, drug testing,
environmental monitoring…
• Cell-based Sensors; functional sensors, drug testing…
• Point-of-care sensors; blood, urine, electrolytes, gases, steroids,
drugs, hormones, proteins, other…
• Bacteria Sensors; (E-coli, streptococcus, other): food industry,
medicine, environmental, other.
• Enzyme sensors; diabetics, drug testing, other.
Environmental Applications
• Detection of environmental pollution and toxicity
• Agricultural monitoring
• Ground water screening
• Ocean monitoring
Optical detection of analyte binding
Fluorescence sensors
• Biological materials – using photo-biochemical
reaction –
– Photo induced luminescence – photoluminescence –
example: Green Fluorescent Proteins (GFP)
– Chemically induced florescence – Bioluminescence Example: Lux

• Physical effects – Luminescence from nanostructured materials
– Semiconductor nano-particles,

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10 nanosensors

  • 2. BIOSENSORS • A device incorporating a biological sensing element either intimately connected to or integrated within a transducer. • Recognition based on affinity between complementary structures like: enzyme-substrate, antibody-antigen , receptorhormone complex. • Selectivity and specificity depend on biological recognition systems connected to a suitable transducer.
  • 6. Biosensor Development • 1916 First report on the immobilization of proteins: adsorption of invertase on activated charcoal. • 1956 Invention of the first oxygen electrode [Leland Clark] • 1962 First description of a biosensor: an amperometric enzyme electrode for glucose. [Leland Clark, New York Academy of Sciences Symposium] • 1969 First potentiometric biosensor: urease immobilized on an ammonia electrode to detect urea. [Guilbault and Montalvo] • 1970 Invention of the Ion-Selective Field-Effect Transistor (ISFET). • 1972/5 First commercial biosensor: Yellow Springs Instruments glucose biosensor. • 1976 First bedside artificial pancreas [Clemens et al.] • 1980 First fiber optic pH sensor for in vivo blood gases. • 1982 First fiber optic-based biosensor for glucose • 1983 First surface plasmon resonance (SPR) immunosensor. • 1987 Launch of the blood glucose biosensor[ MediSense]
  • 9. Bio-receptor/ analyte complexes • Antibody/antigen interactions, • Nucleic acid interactions • Enzymatic interactions • Cellular interactions • Interactions using bio-mimetic materials (e.g. synthetic bio-receptors).
  • 10. Signal transduction methods 1. Optical measurements - luminescence, absorption, surface plasmon resonance 2. Electrochemical - potentiometric, amperometric, etc. 3. Electrical – transistors, nano-wires, conductive gels etc. 4. Mass-sensitive measurements- surface acoustic wave, microcantilever, microbalance, etc.).
  • 11. Electrical sensing Nano-bio interfacing  how to translate the biological information onto electrical signal ? • Electrochemical – Redox reactions • Electrical – FET (Nano wires; Conducting Electro-active Polymers)
  • 12. Electrical sensors FET based methods – FET – Field Effect Transistors  ISFET – Ion Sensitive FET  CHEMFET – Chemically Sensitive FET  SAM-FET – Self Assembly Monolayer Based FET Il principio di funzionamento del transistor a effetto di campo si fonda sulla possibilità di controllare la conduttività elettrica del dispositivo, e quindi la corrente elettrica che lo attraversa, mediante la formazione di un campo elettrico al suo interno. K Corrente elettrica Amplificazione di un segnale in entrata. Funzionamento da interruttore (switcher).
  • 13. Nanowires Biosensors Field Effect Nanobiosensors (FET) • Functionalize the nano-wires • Binding to bio-molecules will affect the nano-wires conductivity.
  • 14. Nanowire Field Effect Nanobiosensors (FET) Sensing Element Semiconductor channel transistor. (nanowire) of the • The semiconductor channel is fabricated using nanomaterials such carbon nanotubes, metal oxide nanowires or Si nanowires. • Very high surface to volume radio and very large portion of the atoms are located on the surface. Extremely sensitive to environment
  • 20. NW grow across gap between electrodes Growing NW connect to the second electrode
  • 21. Form trench in Si and Deposit catalyst NW grows perpendicular NW connects to opposite sidewall
  • 24. Schematic shows two nanowire devices, 1 and 2, where the nanowires are modified with different antibody receptors. Specific binding of a single virus to the receptors on nanowire 2 produces a conductance change (Right) characteristic of the surface charge of the virus only in nanowire 2. When the virus unbinds from the surface the conductance returns to the baseline value.
  • 33. Self-Assembled Electrical Biodetector Based on Reduced Graphene Oxide Due to the presence of polar groups such as hydroxyl, carboxyl, and epoxy groups, GO is very hydrophilic in comparison to graphene. For the purpose of device applications, the drawback when using GO is that it is an insulating material. This can be overcome by the use of a reduction procedure, which improves its conductivity, yielding reduced graphene oxide (RGO). Published in: Tetiana Kurkina; Subramanian Sundaram; Ravi Shankar Sundaram; Francesca Re; Massimo Masserini; Klaus Kern; Kannan Balasubramanian; ACS Nano 2012, 6, 5514-5520.
  • 34. Scheme of the chemical anchoring protocol: (a) electrochemical functionalization of Pt electrodes with tyramine leading to (b) a coating of polytyramine on the electrode surface; (c) incubation of the chip in a GO solution results in the coupling of GO flakes to the polytyramine layer; (d) annealing in argon at 350 °C leads to the removal of the polytyramine layer and the reduction of most of the oxygen-containing groups. WE = working electrode, CE = counter electrode, RE = reference electrode.
  • 35. The samples are annealed in argon at 350 °C for 60 min. This serves two purposes, namely, the removal of the pTy film and simultaneously the reduction of oxygencontaining groups to a large extent
  • 36. Sensing of amyloid beta peptide using RGO immunosensor. (a) Schematic of RGO-FET immunosensor; RE = reference electrode. (b) Field-effect characteristics of the RGO immunosensor before and after functionalization and after the exposure of antibodyfunctionalized device to 1 fM Aβ. (c) Control device showing the field-effect characteristics of another RGO device without the antibody. RGO was covered with Staphylococcus aureus protein A (SpA) through carbodiimide coupling. SpA ensures a proper orientation of the subsequently immobilized antibodies since it has high specificity to the Fc fragments. In a second step, SpA-RGO was modified with anti-Aβ-antibodies by incubating the samples in a 50 mM antibody solution.
  • 37. Scheme of the chemical anchoring protocol: (a) electrochemical functionalization of Pt electrodes with tyramine leading to (b) a coating of polytyramine on the electrode surface; (c) incubation of the chip in a GO solution results in the coupling of GO flakes to the polytyramine layer; (d) annealing in argon at 350 °C leads to the removal of the polytyramine layer and the reduction of most of the oxygen-containing groups. WE = working electrode, CE = counter electrode, RE = reference electrode.
  • 38. Wafer-scale RGO devices with high yield. (a) Photograph of a 4 in. glass wafer with photolithographically patterned electrodes. The electrodes in the red dashed region are connected to each other through the large pads in the upper left and lower bottom. These large pads are used to deposit a polytyramine layer on all the electrodes in a single step. There are 15 chips in the red dashed region, each chip containing six electrode gaps with an electrode layout as shown in Figure 3a. (b) Histogram of resistances of 77 out of the 90 electrode gaps at the end of the chemical anchoring protocol. Thirteen devices showed very high resistances (more than 3 MOhm).
  • 39. Other optical methods • Surface Plasmon Resonance (SPR)
  • 43. Bio-molecule sensing Detection of biomolecules by simple mechanical transduction: target molecule receptor molecule gold SiNx cantilever target binding deflection d - cantilever surface is covered by receptor layer (functionalization) - biomolecular interaction between receptor and target molecules (molecular recognition) - interaction between adsorbed molecules induces surface stress change bending of cantilever
  • 45. Quantitative assay: resonance frequency mass-sensitive detector A f1 1 2 k m eff f1 f1 A f2 1 2 m k m eff f m f2 f2 A mass sensitive resonator transforms an additional mass loading into a resonance frequency shift mass sensor B. Kim et al, Institut für Angewandte Physik - Universität Tübingen f
  • 46. Magnetic sensing • magnetic fields to sense magnetic nanoparticles that have been attached to biological molecules.
  • 47. Stabilization of Magnetic Particles with various Streptavidin Conc. Magnetic nano particle Ligand-functionalized Analyte 10 min reaction None 1 ng/ml 100 ng/ml 100 g/ml Cleaning 5 min deposition Anti-analyte Antibody T. Osaka, 2006
  • 48. Magnetic sensing Sensing plate Magnetic head Activated pixel Idle pixel Magnetic field sensor Magnetic sensing
  • 50. Applications of Nanobiosensors Biological Applications • DNA Sensors; Genetic monitoring, disease • Immunosensors; HIV, Hepatitis,other viral diseas, drug testing, environmental monitoring… • Cell-based Sensors; functional sensors, drug testing… • Point-of-care sensors; blood, urine, electrolytes, gases, steroids, drugs, hormones, proteins, other… • Bacteria Sensors; (E-coli, streptococcus, other): food industry, medicine, environmental, other. • Enzyme sensors; diabetics, drug testing, other. Environmental Applications • Detection of environmental pollution and toxicity • Agricultural monitoring • Ground water screening • Ocean monitoring
  • 51. Optical detection of analyte binding
  • 52. Fluorescence sensors • Biological materials – using photo-biochemical reaction – – Photo induced luminescence – photoluminescence – example: Green Fluorescent Proteins (GFP) – Chemically induced florescence – Bioluminescence Example: Lux • Physical effects – Luminescence from nanostructured materials – Semiconductor nano-particles,