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NANOBIOSENSORS
biosensors on the nano-scale size
BIOSENSORS
• A device incorporating a biological sensing
  element either intimately connected to or
  integrated within a transducer.
• Recognition based on affinity between
  complementary structures like:
     enzyme-substrate, antibody-antigen , receptor-
      hormone complex.
• Selectivity and specificity depend on
  biological recognition systems connected to
  a suitable transducer.
7 nanosensors
7 nanosensors
7 nanosensors
Biosensor Development
• 1916 First report on the immobilization of proteins: adsorption of
  invertase on activated charcoal.
• 1956 Invention of the first oxygen electrode [Leland Clark]
• 1962 First description of a biosensor: an amperometric enzyme electrode
  for glucose. [Leland Clark, New York Academy of Sciences Symposium]
• 1969 First potentiometric biosensor: urease immobilized on an ammonia
  electrode to detect urea. [Guilbault and Montalvo]
• 1970 Invention of the Ion-Selective Field-Effect Transistor (ISFET).
• 1972/5 First commercial biosensor: Yellow Springs Instruments glucose
  biosensor.
• 1976 First bedside artificial pancreas [Clemens et al.]
• 1980 First fiber optic pH sensor for in vivo blood gases.
• 1982 First fiber optic-based biosensor for glucose
• 1983 First surface plasmon resonance (SPR) immunosensor.
• 1987 Launch of the blood glucose biosensor[ MediSense]
Theory
Biosensors

                 Bio-receptor   Transducer
          Molecular                     Optical
DNA                                               Bio-luminescence
Protein                                           Photoluminescence
Glucose                                 Electrical

Etc…..                                            Electronic
          Cell                                    Electrochemical
          Bio-mimetic                   Mechanical
                                                  Resonance
                                                  Bending
Bio-receptor/ analyte complexes

• Antibody/antigen interactions,
• Nucleic acid interactions
• Enzymatic interactions
• Cellular interactions
• Interactions using bio-mimetic materials
(e.g. synthetic bio-receptors).
Signal transduction methods

1. Optical measurements - luminescence,
   absorption, surface plasmon resonance
2. Electrochemical - potentiometric,
   amperometric, etc.
3. Electrical – transistors, nano-wires, conductive
   gels etc.
4. Mass-sensitive measurements- surface
   acoustic wave, microcantilever, microbalance,
   etc.).
Electrical sensing
  Nano-bio interfacing  how to translate the
  biological information onto electrical signal ?
• Electrochemical
   – Redox reactions
• Electrical
   – FET
   (Nano wires; Conducting Electro-active Polymers)
Electrical sensors
FET based methods – FET – Field Effect Transistors
     ISFET – Ion Sensitive FET
     CHEMFET – Chemically Sensitive FET
     SAM-FET – Self Assembly Monolayer Based FET




                               K                  Corrente elettrica
Nanowires Biosensors
             Field Effect
        Nanobiosensors (FET)



• Functionalize the nano-wires
• Binding to bio-molecules will affect the nano-wires conductivity.
Nanowire Field Effect Nanobiosensors (FET)

                    Sensing Element
   Semiconductor channel                            (nanowire) of the
   transistor.

• The semiconductor channel is fabricated using nanomaterials such
  carbon nanotubes, metal oxide nanowires or Si nanowires.
• Very high surface to volume radio and very large portion of the atoms are
  located on the surface. Extremely sensitive to environment
NANOWIRE
NANOTUBE
7 nanosensors
7 nanosensors
7 nanosensors
NW grow across gap between electrodes
Growing NW connect to the second electrode
Form trench in Si and   NW grows        NW connects to opposite
Deposit catalyst        perpendicular   sidewall
7 nanosensors
7 nanosensors
Schematic shows two
nanowire devices, 1 and 2,
where the nanowires are
modified with different
antibody receptors.
Specific binding of a single
virus to the receptors on
nanowire 2 produces a
conductance change
(Right) characteristic of the
surface charge of the virus
only in nanowire 2. When
the virus unbinds from the
surface the conductance
returns to the baseline
value.
7 nanosensors
7 nanosensors
7 nanosensors
7 nanosensors
7 nanosensors
7 nanosensors
7 nanosensors
7 nanosensors
Other optical methods
• Surface Plasmon Resonance (SPR)
Surface Plasmon Resonance (SPR)
Mechanical sensing

Cantilever-based sensing
7 nanosensors
Bio-molecule sensing

                        Detection of biomolecules by
                        simple mechanical transduction:
    target molecule
                        - cantilever surface is covered
    receptor molecule     by receptor layer
    gold                  (functionalization)
    SiNx cantilever
                        - biomolecular interaction
                          between receptor and
                          target molecules
                          (molecular recognition)
    target binding
    deflection d        - interaction between adsorbed
                          molecules induces surface stress
                          change
                             bending of cantilever
7 nanosensors
resonance frequency mass-sensitive detector
                                                                             A

       1       k
f1
      2       m eff                                            f1

                                                                                      f1   f
                                                                             A

        1             k                                         m
f2
       2      m eff        m                                   f2

                                                                                 f2        f
     A mass sensitive resonator transforms an additional mass loading
     into a resonance frequency shift   mass sensor


       B. Kim et al, Institut für Angewandte Physik - Universität Tübingen
Magnetic sensing
• magnetic fields to sense magnetic nano-
  particles that have been attached to biological
  molecules.
Stabilization of Magnetic Particles with various Streptavidin Conc.


  Ligand-functionalized                                                       Magnetic nano -
                                                                              particle
                                                                               Analyte




                                                                        10 min reaction

     None           1 ng/ml         100 ng/ml        100 g/ml
                                                                          Cleaning


                                                                         5 min deposition




Anti-analyte Antibody                                                  T. Osaka, 2006
Magnetic sensing


                                            Sensing plate
Magnetic head


                                               Activated pixel



                                                Idle pixel



                    Magnetic field sensor
                                            Magnetic sensing
Magnetic-optic sensing


                      Polarization   Sensing plate
             Optics
                      Detector
Light
source                                  Activated pixel



                                         Idle pixel
         Polarizer
Applications of Nanobiosensors
Biological Applications
• DNA Sensors; Genetic monitoring, disease
• Immunosensors; HIV, Hepatitis,other viral diseas, drug testing,
   environmental monitoring…
• Cell-based Sensors; functional sensors, drug testing…
• Point-of-care sensors; blood, urine, electrolytes, gases, steroids,
   drugs, hormones, proteins, other…
• Bacteria Sensors; (E-coli, streptococcus, other): food industry,
   medicine, environmental, other.
• Enzyme sensors; diabetics, drug testing, other.
Environmental Applications
• Detection of environmental pollution and toxicity
• Agricultural monitoring
• Ground water screening
• Ocean monitoring
Optical detection of analyte binding
Fluorescence sensors
• Biological materials – using photo-biochemical
  reaction –
   – Photo induced luminescence – photoluminescence –
     example: Green Fluorescent Proteins (GFP)
   – Chemically induced florescence – Bioluminescence -
     Example: Lux
• Physical effects – Luminescence from nano-
  structured materials
   – Semiconductor nano-particles,

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7 nanosensors

  • 2. BIOSENSORS • A device incorporating a biological sensing element either intimately connected to or integrated within a transducer. • Recognition based on affinity between complementary structures like: enzyme-substrate, antibody-antigen , receptor- hormone complex. • Selectivity and specificity depend on biological recognition systems connected to a suitable transducer.
  • 6. Biosensor Development • 1916 First report on the immobilization of proteins: adsorption of invertase on activated charcoal. • 1956 Invention of the first oxygen electrode [Leland Clark] • 1962 First description of a biosensor: an amperometric enzyme electrode for glucose. [Leland Clark, New York Academy of Sciences Symposium] • 1969 First potentiometric biosensor: urease immobilized on an ammonia electrode to detect urea. [Guilbault and Montalvo] • 1970 Invention of the Ion-Selective Field-Effect Transistor (ISFET). • 1972/5 First commercial biosensor: Yellow Springs Instruments glucose biosensor. • 1976 First bedside artificial pancreas [Clemens et al.] • 1980 First fiber optic pH sensor for in vivo blood gases. • 1982 First fiber optic-based biosensor for glucose • 1983 First surface plasmon resonance (SPR) immunosensor. • 1987 Launch of the blood glucose biosensor[ MediSense]
  • 8. Biosensors Bio-receptor Transducer Molecular Optical DNA Bio-luminescence Protein Photoluminescence Glucose Electrical Etc….. Electronic Cell Electrochemical Bio-mimetic Mechanical Resonance Bending
  • 9. Bio-receptor/ analyte complexes • Antibody/antigen interactions, • Nucleic acid interactions • Enzymatic interactions • Cellular interactions • Interactions using bio-mimetic materials (e.g. synthetic bio-receptors).
  • 10. Signal transduction methods 1. Optical measurements - luminescence, absorption, surface plasmon resonance 2. Electrochemical - potentiometric, amperometric, etc. 3. Electrical – transistors, nano-wires, conductive gels etc. 4. Mass-sensitive measurements- surface acoustic wave, microcantilever, microbalance, etc.).
  • 11. Electrical sensing Nano-bio interfacing  how to translate the biological information onto electrical signal ? • Electrochemical – Redox reactions • Electrical – FET (Nano wires; Conducting Electro-active Polymers)
  • 12. Electrical sensors FET based methods – FET – Field Effect Transistors  ISFET – Ion Sensitive FET  CHEMFET – Chemically Sensitive FET  SAM-FET – Self Assembly Monolayer Based FET K Corrente elettrica
  • 13. Nanowires Biosensors Field Effect Nanobiosensors (FET) • Functionalize the nano-wires • Binding to bio-molecules will affect the nano-wires conductivity.
  • 14. Nanowire Field Effect Nanobiosensors (FET) Sensing Element Semiconductor channel (nanowire) of the transistor. • The semiconductor channel is fabricated using nanomaterials such carbon nanotubes, metal oxide nanowires or Si nanowires. • Very high surface to volume radio and very large portion of the atoms are located on the surface. Extremely sensitive to environment
  • 20. NW grow across gap between electrodes Growing NW connect to the second electrode
  • 21. Form trench in Si and NW grows NW connects to opposite Deposit catalyst perpendicular sidewall
  • 24. Schematic shows two nanowire devices, 1 and 2, where the nanowires are modified with different antibody receptors. Specific binding of a single virus to the receptors on nanowire 2 produces a conductance change (Right) characteristic of the surface charge of the virus only in nanowire 2. When the virus unbinds from the surface the conductance returns to the baseline value.
  • 33. Other optical methods • Surface Plasmon Resonance (SPR)
  • 37. Bio-molecule sensing Detection of biomolecules by simple mechanical transduction: target molecule - cantilever surface is covered receptor molecule by receptor layer gold (functionalization) SiNx cantilever - biomolecular interaction between receptor and target molecules (molecular recognition) target binding deflection d - interaction between adsorbed molecules induces surface stress change bending of cantilever
  • 39. resonance frequency mass-sensitive detector A 1 k f1 2 m eff f1 f1 f A 1 k m f2 2 m eff m f2 f2 f A mass sensitive resonator transforms an additional mass loading into a resonance frequency shift mass sensor B. Kim et al, Institut für Angewandte Physik - Universität Tübingen
  • 40. Magnetic sensing • magnetic fields to sense magnetic nano- particles that have been attached to biological molecules.
  • 41. Stabilization of Magnetic Particles with various Streptavidin Conc. Ligand-functionalized Magnetic nano - particle Analyte 10 min reaction None 1 ng/ml 100 ng/ml 100 g/ml Cleaning 5 min deposition Anti-analyte Antibody T. Osaka, 2006
  • 42. Magnetic sensing Sensing plate Magnetic head Activated pixel Idle pixel Magnetic field sensor Magnetic sensing
  • 43. Magnetic-optic sensing Polarization Sensing plate Optics Detector Light source Activated pixel Idle pixel Polarizer
  • 44. Applications of Nanobiosensors Biological Applications • DNA Sensors; Genetic monitoring, disease • Immunosensors; HIV, Hepatitis,other viral diseas, drug testing, environmental monitoring… • Cell-based Sensors; functional sensors, drug testing… • Point-of-care sensors; blood, urine, electrolytes, gases, steroids, drugs, hormones, proteins, other… • Bacteria Sensors; (E-coli, streptococcus, other): food industry, medicine, environmental, other. • Enzyme sensors; diabetics, drug testing, other. Environmental Applications • Detection of environmental pollution and toxicity • Agricultural monitoring • Ground water screening • Ocean monitoring
  • 45. Optical detection of analyte binding
  • 46. Fluorescence sensors • Biological materials – using photo-biochemical reaction – – Photo induced luminescence – photoluminescence – example: Green Fluorescent Proteins (GFP) – Chemically induced florescence – Bioluminescence - Example: Lux • Physical effects – Luminescence from nano- structured materials – Semiconductor nano-particles,