This paper proposes a new method for joint timing offset and channel estimation in OFDM systems using fractional Fourier transform and constant amplitude zero autocorrelation sequences. After estimating the timing offset in the frequency domain, compensation is performed in the time domain. Channel estimation then uses least squares with discrete Fourier transform and linear interpolation to recover the transmitted signal. Simulation results show the proposed method achieves good performance in terms of mean square error for timing offset estimation compared to other techniques, especially for fast fading channels. It also estimates the channel well while maintaining throughput.